Locus 1915

Sequence ID 2R_DroMel_CAF1
Location 7,201,204 – 7,201,308
Length 104
Max. P 0.775513
window3168

overview

Window 8

Location 7,201,204 – 7,201,308
Length 104
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.24
Mean single sequence MFE -30.90
Consensus MFE -19.98
Energy contribution -19.28
Covariance contribution -0.69
Combinations/Pair 1.29
Mean z-score -1.57
Structure conservation index 0.65
SVM decision value 0.54
SVM RNA-class probability 0.775513
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7201204 104 - 20766785
AAGGCUCAAGAGCGAGUGGCUGUCAAAACGCAUGCCCUGAAAAUGGGCGUGGCCAAUGAUGUGUAGGAUAGGA-UUUCUAUUAGAGAUUGGA-------UGU-UUUUGAAAUC-
.....(((((((((................(((((((.......))))))).(((((.....((((((.....-.)))))).....))))).-------)))-))))))....- ( -29.50)
>DroSec_CAF1 859 104 - 1
AAGGCUCAAGAGCGAGUGGCUGUCAAAACGCAUGCUCUAAAAAUGGGCGUGGCCAAUGAUGUGUAGGACAGGA-AUUCUAUUAGAGAUUGGA-------UGU-UUUUGAAAGC-
...((((......)))).(((.((((((..(((((((.......))))))).(((((.....((((((.....-.)))))).....))))).-------...-)))))).)))- ( -27.60)
>DroSim_CAF1 3720 104 - 1
AAGGCUCAAGAGCGAGUGGCUGUCAAAACGCAUGCCCUGAAAAUGGGCGUGGCUAAUGAUGUGUAGGAUAGGA-UUUCUAUUAGAGAUUGGA-------UAU-UUUUGAAAGC-
...((((......)))).(((.((((((..(((((((.......))))))).(((((.....((((((.....-.)))))).....))))).-------...-)))))).)))- ( -29.30)
>DroEre_CAF1 2757 106 - 1
AAGGCUCAAGAGCGAGUGGCUGUGAAGACGCAUGCCCUGAAAAUGGGCGUGGCCAAUGAUGUGUAGGAAACGUCUUUCCCAUGGUCAUUUU-------CUUUUUAUUAAAAAA-
.......(((((.((((((((((((((((.(((((((.......)))))))..............(....))))))...))))))))))).-------)))))..........- ( -33.90)
>DroYak_CAF1 4230 112 - 1
AAGGCUCAAGAGCGGGUGGCCGUGAAAACGCAUGCCCUGAAAAUGGGCGUGGCCAAUGAUGUGUAGGAUACAU-UUUCCUUUGGAAAUUUGACUAUGAAUUCCUAUUAAGAAC-
...(((....)))...(((((((....))..((((((.......))))))))))).......((((((..(((-(((((...))))).......)))...)))))).......- ( -30.81)
>DroPer_CAF1 7451 98 - 1
AAGUCCCAGGAGCGGGUGGCCGUCAAGACGCAUGCCCUCAAAAUGGGCGUGGCCAAUGAUGUGUGGG-UAGAUCCUUC-------GAUGGAA-------UGC-CUUGGCGAUCC
..((((((((.(((.....((((((((...(((((((.......)))))))(((.((.....)).))-).....))).-------)))))..-------)))-))))).))).. ( -34.30)
>consensus
AAGGCUCAAGAGCGAGUGGCUGUCAAAACGCAUGCCCUGAAAAUGGGCGUGGCCAAUGAUGUGUAGGAUAGGA_UUUCUAUUAGAGAUUGGA_______UGU_UUUUGAAAAC_
...((((......))))((((((....)))(((((((.......))))))))))............................................................ (-19.98 = -19.28 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:15 2006