Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,195,180 – 7,195,297 |
Length | 117 |
Max. P | 0.543719 |
Location | 7,195,180 – 7,195,297 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -19.70 |
Energy contribution | -20.38 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.72 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7195180 117 - 20766785 GAAUGUAUCCCCUAAAUGGCUGUGGCAACACUGAAAAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUCAAUUAUUUCGACUUCUUAUUU- (((((((..(....((((((((((((.((((..(((..((......))..)))..)))).))))))....(....)....)))))))..))))))).....................- ( -30.20) >DroSec_CAF1 28249 118 - 1 GAAUUUAUCCCCUGAAUUGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGGGGCCACACUAACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUAC ............(((((((.((((((..(((..(((..((......))..)))..)))..))))))..(((...(((....)))..))).....)))))))................. ( -22.50) >DroSim_CAF1 27679 117 - 1 GAAUUUAUCCCCUGAAUGGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUU- ..............((((((((((((.((((..(((..((......))..)))..)))).))))))....(....)....))))))...............................- ( -22.70) >DroEre_CAF1 23246 117 - 1 GCAUUUUUGCCCUGAUUGGCUGUGGCAGCACUGCAGAUAGUUUUGCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUCAUUUAUUUCGACUUCUAAUUU- (((.....(((..(((..(.((((((.((((((((((....)))))........))))).)))))))..).))..))).)))...................................- ( -28.00) >DroYak_CAF1 24954 117 - 1 UCAUAUUUCCAGUGAACGGCUGUGGCAGCACUGAAGAUAGUUUUCGCUUGUUUUGGUGUGGCCACACUGCCUGUUGGCUUGCUAUUGUUUACAUUUAUUUAUUUCGCCUUCUAAUUU- ...........(((((((((((((((.((((..(((..(((....)))..)))..)))).))))))..(((....)))..)))...)))))).........................- ( -32.70) >consensus GAAUUUAUCCCCUGAAUGGCUGUGGCAACACUGAAGAUAGUUUUCCCUUGUUUUGGUGUGGCCACACUGACUUUUGGCUUGCUAUUGUUUACAUUAAUUUAUUUCGACUUCUUAUUU_ ..............((((((((((((.(((((((((..((......))..))))))))).))))))(........)....))))))................................ (-19.70 = -20.38 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:13 2006