Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,193,930 – 7,194,039 |
Length | 109 |
Max. P | 0.523547 |
Location | 7,193,930 – 7,194,039 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -24.04 |
Consensus MFE | -15.24 |
Energy contribution | -18.80 |
Covariance contribution | 3.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7193930 109 + 20766785 ---GAAAGUUUUUAGGCACUUAUGUAUAUGUGAGUAAAAAACAUUUUCGCUUGCGAUAUGCAC-------AAGAUAGUGUU-AACAAAGACACCAGUAUAAUAAUAUUCUAGUUACAUAU ---....((..(((((..(((.((((((((..((..(((.....)))..))..).))))))).-------)))...(((((-......)))))..............)))))..)).... ( -22.60) >DroSec_CAF1 27190 116 + 1 UUUGAAAGUUUCUAGGCACCU----ACAUGUGUUUAAAAAACAUUUUCUCUUGCGAUUGGCGUAUCUACUAAGAUAGUAUUAACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((.(((((((..----....))))))).))...))))))...(((((((((......(((((...)))))....)))).....((((((((....)))))))))))))... ( -21.60) >DroSim_CAF1 26426 115 + 1 UUUGAAAGUUUUCAGGCACCU----ACAUGUGUUUAAGAAACAUUUUCGCUUGCGAUUGGCGUAUCUACUAAGAUAGUGUU-ACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((((((((((..----....))))))..)))).))))))...(((((((((.((((.........(((((((-......)))))))........)))).)))))))))... ( -27.93) >consensus UUUGAAAGUUUUUAGGCACCU____ACAUGUGUUUAAAAAACAUUUUCGCUUGCGAUUGGCGUAUCUACUAAGAUAGUGUU_ACCAAAGACACUAGAAUAUUAAUAUUCUAGUUGCAUAU ...((((((((((((((((..........))))))))))...))))))...(((((((((.((((.........(((((((.......)))))))........)))).)))))))))... (-15.24 = -18.80 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:12 2006