Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,193,708 – 7,193,828 |
Length | 120 |
Max. P | 0.606789 |
Location | 7,193,708 – 7,193,828 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -41.05 |
Consensus MFE | -26.02 |
Energy contribution | -28.28 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.24 |
Mean z-score | -1.78 |
Structure conservation index | 0.63 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7193708 120 + 20766785 GCGGGGCAAGUCGUUGGAGGAAAUUGAGCGAAAGAUGAUGGGCCGUGUGCCCAUGUCCUCGGUGGUCAACAUCAAGCCAUUUCCUUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA .((((((.........(((((.......(....)...((((((.....)))))).)))))((((.....))))..)))...(((((.((((((((.....))))))))..))))).))). ( -43.30) >DroSec_CAF1 26921 120 + 1 GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUUCCUUUAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA (((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((...(((((((((((((.....))))))))..)))))..)). ( -42.70) >DroSim_CAF1 26157 120 + 1 GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUUCCUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA (((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((...(((((((((((((.....))))))))..)))))..)). ( -44.30) >DroAna_CAF1 23964 113 + 1 GCGUGGCAAGACCCUGGAGGAAAUCGAGCAGAAGUUGACGGGCA------CCAUGUCCGCGAUGAUUAACUUUAAGCCUUUGCCCAUGAACAUGUAAACGUCCU-UUACCAGGGUCCACA ..((((....(((((((((((......((((((((((((((((.------....)))))......))))))))..((....)).........))).....))))-...))))))))))). ( -33.90) >consensus GCGGGGCAAGUCGCUGGAGGAAAUCGAGCGAAAGAUGAUGGGCCGUGUGCCCAUAUCCGCGGUGGUCAACAUCAAGCCAUUUCCCUUCAACAUGUAAAUGGCGUGUUGCUAAGGAUCUGA (((((.....(((((.((.....)).)))))......((((((.....)))))).)))))((((.....))))....((..(((((.((((((((.....))))))))..)))))..)). (-26.02 = -28.28 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:11 2006