Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,193,360 – 7,193,480 |
Length | 120 |
Max. P | 0.876267 |
Location | 7,193,360 – 7,193,480 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -42.51 |
Consensus MFE | -32.64 |
Energy contribution | -31.27 |
Covariance contribution | -1.37 |
Combinations/Pair | 1.35 |
Mean z-score | -2.00 |
Structure conservation index | 0.77 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7193360 120 + 20766785 UGUGUCCCAUUUGGGUUGGUUGCCACUCACUUGCUUCGUUAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGUGAGAUUCUGCCAGCCAAGAUUCG ........((((.(((((((.....(((((((...((((((.(((......(((.....)))(((((....).)))).....))).)))))).))))))).....))))))).))))... ( -38.60) >DroSec_CAF1 26565 120 + 1 UGUGUCCCAUUUGGGUUGGUUGCCACUCUCUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG .....(((....)))(((((((.((...(((((((.(((((((..((....(((.....)))(((((....).)))).....))...))))))))))))))...)).)))))))...... ( -44.20) >DroSim_CAF1 25801 120 + 1 UGUGUCCCAUUUGGGUUGGCUGCCACUCACUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG .....(((....)))(((((((.((....((((((.(((((((..((....(((.....)))(((((....).)))).....))...)))))))))))))....)).)))))))...... ( -44.60) >DroAna_CAF1 23619 120 + 1 CGUCAGCGACUUGGGCUGGUUGCCCUUGACCUGUUUUGUCGUCUAUGUCAUUGGCUUCUCUAUGGGAUUUGGACCAAUACCCUGGCUAAUGAUGGGCGAAAUCCUGCCGGCCAAAGUCCG .....(.(((((.((((((((((((..(((.......)))......((((((((((......(((........))).......))))))))))))))).......))))))).)))))). ( -42.63) >consensus UGUGUCCCAUUUGGGUUGGUUGCCACUCACUUGCUUCGUCAUCUACAUUCUGGGAUUCUCCCUGGGCUUCGGACCCAUUCCCUGGCUGAUGAUGGGCGAGAUUCUGCCAGCCAAGAUUCG ........((((.(((((((.........((((((.(((((((........(((.....)))..((((..(((.....)))..))))))))))))))))).....))))))).))))... (-32.64 = -31.27 + -1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:10 2006