Locus 191

Sequence ID 2R_DroMel_CAF1
Location 1,448,166 – 1,448,286
Length 120
Max. P 0.755690
window439

overview

Window 9

Location 1,448,166 – 1,448,286
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 75.44
Mean single sequence MFE -25.50
Consensus MFE -18.06
Energy contribution -18.51
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.71
SVM decision value 0.49
SVM RNA-class probability 0.755690
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1448166 120 + 20766785
GCUUCCAACCUUUUCGAAAGUCUUCGAACGCAUUCUUCUGAAGCGAUUCAUGGAACUGUCUGAAUACCCUAUGCACAGCAGAUAUGUCAGUUCCGUCCACCAGUACUCUCUCGGACUCGA
.............((((........((((((.(((....)))))).)))..(((((((((((................)))).....)))))))((((...((....))...)))))))) ( -25.59)
>DroSec_CAF1 66335 98 + 1
GCUUCCAUCCUUUUUAAAAGUCUUCGAACGCAUUCUGCUGAAGCGAUUGAUGGAACUGUCUGUACAUCCUCUACACAGCAGGUAUGACAGUUCCGAAC----------------------
.......................((((.(((.(((....)))))).))))((((((((((.((((...((......))...))))))))))))))...---------------------- ( -26.10)
>DroSim_CAF1 65213 98 + 1
GCUUCCACCUUUUUUAAGAGUCUUCGAACGCAUUCUGCUGAAGCGAUUGAUGGAAUUGUCUGUGCAUCCUCUACACAACAGAUAUGACAGUUCCGUCC----------------------
(((((.(((((....))).))........((.....)).)))))....((((((((((((((((.........))))........)))))))))))).---------------------- ( -24.80)
>consensus
GCUUCCAACCUUUUUAAAAGUCUUCGAACGCAUUCUGCUGAAGCGAUUGAUGGAACUGUCUGUACAUCCUCUACACAGCAGAUAUGACAGUUCCGUCC______________________
.......................((((.(((.(((....)))))).))))((((((((((.........................))))))))))......................... (-18.06 = -18.51 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:56 2006