Locus 1909

Sequence ID 2R_DroMel_CAF1
Location 7,193,095 – 7,193,215
Length 120
Max. P 0.864297
window3162

overview

Window 2

Location 7,193,095 – 7,193,215
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -30.47
Consensus MFE -20.86
Energy contribution -20.42
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -2.07
Structure conservation index 0.68
SVM decision value 0.84
SVM RNA-class probability 0.864297
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7193095 120 - 20766785
UCUGCCCAACCGAUCAAUCAGAAUGAUGCCCAUAAACGUAGCAAAAAAGUUAACUACACCCACGAUGAUCGUGGAAAGAUUGCUAUCAAUUGUGGAUCCCGCAUCCUUGAAGAUCUGGAC
.........((((((..((((...(((((((((((..(((((((....((.....))..(((((.....))))).....)))))))...)))))).....))))).)))).)))).)).. ( -32.30)
>DroSec_CAF1 26299 120 - 1
UCUGCCCAACCGAUCAAUCAGAAUGAUGCCCAUAAACGUAGCAAAAAAGUUAACAAUACCCACGAUGAUCGUGCAAAGAUUGCUAUCAAUUGUGGAUCCCGCAUCCUUGAAGAUCUGGAC
.........((((((..((((...(((((((((((..(((((((....(....)......((((.....))))......)))))))...)))))).....))))).)))).)))).)).. ( -27.20)
>DroSim_CAF1 25535 120 - 1
UCUGCCCAACCGAUCAAUCAGAAGGAUGCCCAUAAACGUAGCAAAAAAGUUAACAAUACCCACGAUGAUCGUGCAAAGAUUGCUAUCAAUUGUGGAUCCCGCAUCCUUGAAGAUCUGGAC
.........((((((..(((..(((((((((((((..(((((((....(....)......((((.....))))......)))))))...)))))).....)))))))))).)))).)).. ( -31.60)
>DroAna_CAF1 23356 120 - 1
CCGGCCAACUUUAUCGAUCAGUGCAGUGGCCACAAAUGUGGCCAUGAAGUUCACCACGCCCACAAUAAUUGUGCACACAUAGCUAUCUAUAGUGGAUCCUGCAUCCUUGAAAAUAGACAC
.............((((...(((((((((((((....))))))).........(((((..((((.....))))..)..((((....)))).))))...))))))..)))).......... ( -30.80)
>consensus
UCUGCCCAACCGAUCAAUCAGAAUGAUGCCCAUAAACGUAGCAAAAAAGUUAACAACACCCACGAUGAUCGUGCAAAGAUUGCUAUCAAUUGUGGAUCCCGCAUCCUUGAAGAUCUGGAC
.........((((((..((((...(((((((((((..(((((((....((.....))...((((.....))))......)))))))...)))))).....))))).)))).)))).)).. (-20.86 = -20.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:09 2006