| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,190,122 – 7,190,234 |
| Length | 112 |
| Max. P | 0.519118 |
| Location | 7,190,122 – 7,190,234 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 74.35 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -18.06 |
| Energy contribution | -18.78 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7190122 112 + 20766785 --UAAU-AAUAUUUGAUAUUUUUAUGUA----CAGUUGCUAUGGGCGCGCAUGGAGCGUUCUGGCUAUUCGGCGCCAUCUGCUUCGUGGGUCUGUUCUUUGUGAUAAUCUACGUGCCCG --..((-(.((.(((((((....)))).----))).)).)))((((((((((((((((...((((........))))..)))))))))((..((((......))))..)).))))))). ( -31.80) >DroPse_CAF1 19823 113 + 1 GCUAAUGAAUGUUCCUUGUU--CCUCUU----UAGAUUUCAUGGGCGCCCAUGGAGCCUUCUGGCUGUUUGGAUCCAUCUGCUUCAUUGGCCUAUUCUUUGUGAUAUUAUACGUGCCCG (((((((((.((.......(--((....----......((((((....))))))((((....))))....))).......)))))))))))............................ ( -28.64) >DroWil_CAF1 27793 117 + 1 -CUAAU-AAUAAUUGCUAAUUCCCUGUCCAAACAGAUGUCAUUGGUUCAUAUGGUGCCUUUUGGCUAUUCGGAGCCAUUUGCUUUAUUGGCCUAUUCUUUGUGAUAAUCUAUGUGCCCG -.....-.......((.......((((....)))).((((((((((((.......(((....)))......))))))...(((.....))).........))))))........))... ( -21.62) >DroMoj_CAF1 31120 104 + 1 -----UUAAC------UAUCUGAAUCUC----UAGAUGUUAUGGGCGCACAUGGUGCCUUUUGGAUGUUUGGCGCCAUCUGCUUCGUUGGCCUGUUCUUUGUGAUAUUCUAUGUGCCUG -----.((((------.(((((......----))))))))).(((((((.((((((((............))))))))..(((.....)))....................))))))). ( -29.40) >DroAna_CAF1 20146 105 + 1 --UAA-----ACUCCA---UUUUUUGUU----UAGAUGUCAUGGGCGCUCAUGGAGCCUUCUGGCUGUUUGGAGCCAUCUGCUUCAUUGGCCUGUUCUUUGUGAUACUCUAUGUGCCCG --(((-----((....---......)))----))........(((((((((..(((....(.(((((..((((((.....)))))).))))).)..)))..)))........)))))). ( -30.60) >DroPer_CAF1 19756 113 + 1 GCUAAUGAAUGUUCCUCGAU--CCUCUU----UAGAUUUCAUGGGCGCCCAUGGAGCCUUCUGGCUGUUUGGAUCCAUCUGCUUCAUUGGCCUGUUCUUUGUGAUAUUGUACGUGCCCG (((((((((.((.....(((--((....----......((((((....))))))((((....))))....))))).....)))))))))))............................ ( -32.50) >consensus __UAAU_AAUAUUCCAUAUUU_CCUCUU____UAGAUGUCAUGGGCGCACAUGGAGCCUUCUGGCUGUUUGGAGCCAUCUGCUUCAUUGGCCUGUUCUUUGUGAUAUUCUACGUGCCCG ..........................................((((((.((..(((......((((...((((((.....))))))..))))....)))..)).........)))))). (-18.06 = -18.78 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:08 2006