Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,177,126 – 7,177,220 |
Length | 94 |
Max. P | 0.651988 |
Location | 7,177,126 – 7,177,220 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -19.35 |
Energy contribution | -19.72 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7177126 94 - 20766785 AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUU-UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUGC ....................((((....(((((((((((((((....)))))..--(((..-.....)))..)))))).))))...))))....... ( -22.60) >DroSec_CAF1 10459 95 - 1 AAAUCCACAAACAAAACGACGAUCAACGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUUUUUAGUCUGCCAACCAGUAUGCAAAGAUUAAAAUAC ....................((((....((((((((..(((((....)))))..--(((........)))....)))).))))...))))....... ( -17.30) >DroSim_CAF1 9124 95 - 1 AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA--CAGUUUUUAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC ....................((((....(((((((((((((((....)))))..--(((........)))..)))))).))))...))))....... ( -22.90) >DroEre_CAF1 8072 94 - 1 AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCCUGACUAGUUAGUCAUA--CAGUG-UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC ....................(((((((((((.(((((((((((....))))...--.)).)-)))).).))).))).(....)...))))....... ( -21.70) >DroYak_CAF1 9026 96 - 1 AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUACACAGUU-UCAGUCUGGCAGCCAGUAUGCAAAGAUUAAAAUAC ....................((((....(((((((((((((((....)))))....(((..-.....)))..)))))).))))...))))....... ( -23.50) >DroAna_CAF1 7582 88 - 1 AAU---AUGGAAAAAUGAACGAUCG---GCGUCUGGCUUGACUAGUUAGUCAUA--CGGCC-AUAGUCUGCCAUCCAGUAUGCAAAGAUUAAAAUAC ...---..............((((.---((((((((..(((((....)))))..--.(((.-.......)))..)))).))))...))))....... ( -20.90) >consensus AAACCCACAAACAAAACGACGAUCGGCGGCGUCUGGCUUGACUAGUUAGUCAUA__CAGUU_UCAGUCUGCCAGCCAGUAUGCAAAGAUUAAAAUAC ....................((((....(((((((((((((((....)))))....(((........)))..)))))).))))...))))....... (-19.35 = -19.72 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:04 2006