Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,172,464 – 7,172,555 |
Length | 91 |
Max. P | 0.663136 |
Location | 7,172,464 – 7,172,555 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.35 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -29.20 |
Energy contribution | -29.45 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.92 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7172464 91 + 20766785 CAGCCGGAAGCUGCACGUCUGGCUACCCAAGAGGGCUACCAAGUC----AAGUGAUCUUGGGGGCGCUCAACAAUGUUUGGCCAGGAACGUAACA (((.(....)))).(((((((((((..((.(((.((..(((((((----....)).)))))..)).))).....))..)))))))..)))).... ( -35.20) >DroSec_CAF1 5985 90 + 1 CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC----GAGUGAUCUUGG-GGCGCUCAACAAUGUUUGGCCAGGAACGUAACA (((.(....))))....((((((((..((.(((.(((.(((((((----....)).)))))-))).))).....))..))))))))......... ( -30.70) >DroSim_CAF1 4595 90 + 1 CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC----GAGUGAUCUUGG-GGCGCUCAACAAUGUUUGGCCAGGAACGUAAUA (((.(....))))....((((((((..((.(((.(((.(((((((----....)).)))))-))).))).....))..))))))))......... ( -30.70) >DroEre_CAF1 3559 93 + 1 CAGCCGGAAGCUGGUCGUCUGGCUACCCAAGAG-GCUCCCAAGUCGAUCGAGAGAUCUUGG-GGCGCUCCACAAUGUUUGACCAGGUAAGUAACA ..(((((.(((..(....)..))).))...(((-((.(((((...((((....))))))))-))).)))...............)))........ ( -30.80) >consensus CAGCCGGAAGCUGCUCGUCUGGCUACCCAAGAGGGCUACCAAGUC____GAGUGAUCUUGG_GGCGCUCAACAAUGUUUGGCCAGGAACGUAACA (((.(....))))....((((((((..((.(((.(((.(((((((........)).))))).))).))).....))..))))))))......... (-29.20 = -29.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:02 2006