| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,169,216 – 7,169,333 |
| Length | 117 |
| Max. P | 0.652323 |
| Location | 7,169,216 – 7,169,333 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.46 |
| Mean single sequence MFE | -27.24 |
| Consensus MFE | -19.60 |
| Energy contribution | -20.12 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7169216 117 - 20766785 UUAC---GAGUCACUUGACCUUUUCACCCCGAUCGGUUGAUUCAAUUAAGUCGAUUUUUGAAUUACCUACUGAGGGUGUAAGUAUGAAUGUCCACCAGGUGAUUCACCAAUCAAUUCAAG ....---((((((((((..(((..(((((...(((((((((((((............))))))))...)))))))))).)))..((......)).))))))))))............... ( -30.30) >DroSec_CAF1 1424 109 - 1 UUAC---GAGUCACUUGACCUUUUCACCCCGACCGUUUGAUUCAAUUAAGUCGAUUUCUGAAUUACCUACAGAGGGUGUAAG--------UUCACCAGGUGAUUCACCAAUCAAUUGAAG ....---(((((((((((.(((..(((((((((...(((...)))....))))...((((.........))))))))).)))--------.)))...))))))))............... ( -27.50) >DroSim_CAF1 1394 117 - 1 UUAC---GAGUCACUUGACCUUUUCACCCCGACCGGUUGAUUCAAUUAAGUCGAUUUCUGAAUUACCUACAGAGGGUGUAAGUAUGAAUGUCCACCAGGUGAUUCACCAAUCAAUUCAAG ....---((((((((((..(((..(((((((((.(((((...)))))..))))...((((.........))))))))).)))..((......)).))))))))))............... ( -28.70) >DroEre_CAF1 400 117 - 1 UUAC---GAGUCACUUGACCUUUUCACCCCGUCCGGUUGAUUCAAUUAAGUCGAUAUCUGUAAAACCUACACAGGGUGUAACUACGAAUGUCCACCUGGUGAUUCACCAAUCAAUUCAAA ....---((((((((.(((.(((.(((((.((...(((((((......)))))))....(((.....))))).))))).......))).))).....))))))))............... ( -23.60) >DroYak_CAF1 1343 120 - 1 UUACGACGAGUCACUUGACCUUUUCACCCCGUCCGGUUGAUUUAAUUAAGUCGACUUCUCUAAUACCUACACAGGGUGUUUAAAUAAAUGUCCAUUUGGUGAUUCACCAAUCAACUCAAA ....((((((((((((((.....(((.((.....)).))).....)))))).)))))....(((((((.....))))))).........)))...((((((...)))))).......... ( -26.10) >consensus UUAC___GAGUCACUUGACCUUUUCACCCCGACCGGUUGAUUCAAUUAAGUCGAUUUCUGAAUUACCUACAGAGGGUGUAAGUAUGAAUGUCCACCAGGUGAUUCACCAAUCAAUUCAAG .......((((((((((..................(((((((......)))))))........(((((.....))))).................))))))))))............... (-19.60 = -20.12 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:01 2006