| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,168,262 – 7,168,363 |
| Length | 101 |
| Max. P | 0.642162 |
| Location | 7,168,262 – 7,168,363 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.98 |
| Mean single sequence MFE | -36.85 |
| Consensus MFE | -33.15 |
| Energy contribution | -33.18 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7168262 101 + 20766785 ---------------AC--UAAUCAU-UU-CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGGCUUU ---------------.(--((.((((-((-..(((((((((((.......))))).....((((((.....)))))).((((........))))..)))))).)))))))))........ ( -34.80) >DroVir_CAF1 7638 107 + 1 AAUGA----------CC--ACAUUUU-UAUCAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGCUUUG .....----------((--((.....-((((.(((((((((((.......))))).....((((((.....)))))).((((........))))..))))))..))))))))........ ( -35.80) >DroGri_CAF1 437 113 + 1 AUUUU---AUUGAAGUU--CAAACUU-GA-CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGCUUUG .....---......(((--((.((((-(.-..(((((((((((.......))))).....((((((.....)))))).((((........))))..)))))))))))..)))))...... ( -40.50) >DroWil_CAF1 671 103 + 1 ---------------ACAUUAGUGAC-AA-CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGAGGACGCUUUG ---------------...........-..-..(((((((((((.......))))).....((((((.....)))))).((((........))))..)))))).(((((.....))))).. ( -33.70) >DroMoj_CAF1 7473 116 + 1 AGUUUUAAGUCGAAGUU--CCAUUUU-UA-CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGCUUUG ..........(((((((--(((((..-..-..(((((((((((.......))))).....((((((.....)))))).((((........))))..)))))).....)))))).)))))) ( -41.10) >DroAna_CAF1 416 102 + 1 ---------------CU--UUUUUGUUGU-CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGCUUUG ---------------..--..((..(..(-(.(((((((((((.......))))).....((((((.....)))))).((((........))))..))))))..))..)..))....... ( -35.20) >consensus _______________AC__UAAUUUU_UA_CAUCCCUUGCGGGGAUCGAACCCGCGACCUUUGGAUUAGAAGUCCAACGCGCUAUCCUCUGCGCCAAAGGGACAGGUGGUGGACGCUUUG ................................(((((((((((.......))))).....((((((.....)))))).((((........))))..)))))).(((((.....))))).. (-33.15 = -33.18 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:00 2006