Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,156,098 – 7,156,194 |
Length | 96 |
Max. P | 0.999940 |
Location | 7,156,098 – 7,156,194 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -22.42 |
Energy contribution | -22.62 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.94 |
Structure conservation index | 0.89 |
SVM decision value | 3.84 |
SVM RNA-class probability | 0.999652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7156098 96 + 20766785 UCGCAGUGCAGCCUGCUUUUAUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUUUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUGUGGCUGCAA ......(((((((.........(((...((......)).)))................(((.....((((((......)))))).)))))))))). ( -23.90) >DroSec_CAF1 19313 96 + 1 UCGCAGUGCAGCCUGCUUUUAUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUGUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUGCGGCUGCAA ......(((((((.((......(((...((......)).))).......(((((....)))))...((((((......))))))..))))))))). ( -27.20) >DroSim_CAF1 19831 96 + 1 UCGCAGUGCAGCCUGCUUUUAUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUUUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUGCGGCUGCAA ......(((((((.((......(((...((......)).)))........................((((((......))))))..))))))))). ( -25.50) >DroEre_CAF1 21316 96 + 1 GCGCAGUGCAGCCUGCUCUAAUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUUUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUCUGGCUGCAA ......(((((((...(((((((((...((......)).)))...))))))...............((((((......))))))....))))))). ( -26.60) >DroYak_CAF1 19670 96 + 1 GCGCAGUGCAGCCUGCUUUUGUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUUUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUCUAGCUGCAA ......(((((((((...(((.(((...((......)).))).))).)))................((((((......)))))).....)))))). ( -23.20) >consensus UCGCAGUGCAGCCUGCUUUUAUGGCUUUGCUAAUUUGUUGCCUCAAUUAGAUUUUUUGACAUUAUUGCAGUUUUUAUUAAUUGCUUGUGGCUGCAA ......(((((((.........(((...((......)).)))........................((((((......))))))....))))))). (-22.42 = -22.62 + 0.20)
Location | 7,156,098 – 7,156,194 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -19.54 |
Energy contribution | -19.38 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.90 |
Structure conservation index | 0.94 |
SVM decision value | 4.70 |
SVM RNA-class probability | 0.999940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7156098 96 - 20766785 UUGCAGCCACAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAAAAUCUAAUUGAGGCAACAAAUUAGCAAAGCCAUAAAAGCAGGCUGCACUGCGA .(((((((....(((.((......)).)))................((((((..(....).))))))................)))))))...... ( -19.90) >DroSec_CAF1 19313 96 - 1 UUGCAGCCGCAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAACAUCUAAUUGAGGCAACAAAUUAGCAAAGCCAUAAAAGCAGGCUGCACUGCGA .(((((((((..(((.((......)).)))................((((((..(....).)))))).............)).)))))))...... ( -21.90) >DroSim_CAF1 19831 96 - 1 UUGCAGCCGCAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAAAAUCUAAUUGAGGCAACAAAUUAGCAAAGCCAUAAAAGCAGGCUGCACUGCGA .(((((((((..(((.((......)).)))................((((((..(....).)))))).............)).)))))))...... ( -21.90) >DroEre_CAF1 21316 96 - 1 UUGCAGCCAGAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAAAAUCUAAUUGAGGCAACAAAUUAGCAAAGCCAUUAGAGCAGGCUGCACUGCGC .(((((((..((....)).........(((..(((((.........((((((..(....).))))))......)))))..))))))))))...... ( -22.26) >DroYak_CAF1 19670 96 - 1 UUGCAGCUAGAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAAAAUCUAAUUGAGGCAACAAAUUAGCAAAGCCACAAAAGCAGGCUGCACUGCGC .((((((...((....))........((((.......((((.........))))(((..............)))......))))))))))...... ( -18.14) >consensus UUGCAGCCACAAGCAAUUAAUAAAAACUGCAAUAAUGUCAAAAAAUCUAAUUGAGGCAACAAAUUAGCAAAGCCAUAAAAGCAGGCUGCACUGCGA .(((((((....(((.((......)).)))................((((((..(....).))))))................)))))))...... (-19.54 = -19.38 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:59 2006