Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,445,616 – 1,446,046 |
Length | 430 |
Max. P | 0.999980 |
Location | 1,445,616 – 1,445,724 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.19 |
Mean single sequence MFE | -37.96 |
Consensus MFE | -35.60 |
Energy contribution | -35.80 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.94 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445616 108 - 20766785 AUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC------------AACAAGCGAGAGGAAUGCUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCUGCCAGUGUGUGAGCCUGC (((((((((((((((((((.......)))))))))------------..((((((.......)))))).........)))))))))).(((...((((..(.....)..)))).)))... ( -37.80) >DroSec_CAF1 63677 108 - 1 AUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC------------AACAAGCGCGAGGAAUGCUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCUGCCAGUGUGUGAGCCUGC (((((((((((((((((((.......)))))))))------------..((((((.......)))))).........)))))))))).(((...((((..(.....)..)))).)))... ( -38.10) >DroSim_CAF1 62297 108 - 1 AUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC------------AACAAGCGCGAGGAAUGCUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCUGCCAGUGUGUGAGCCUGC (((((((((((((((((((.......)))))))))------------..((((((.......)))))).........)))))))))).(((...((((..(.....)..)))).)))... ( -38.10) >DroEre_CAF1 73176 114 - 1 AUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGCAAC------UGCAACAAGCGAGGAAAAUGCUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCCGGCAGUGUGUGAGCCUGU (((((((((((((((((((.......)))))))))..(------((...((((((.......))))))...)))...)))))))))).(((...((((..(.....)..)))).)))... ( -39.50) >DroYak_CAF1 70311 120 - 1 AUGAAUUGCAGCUGUUGCGUAUACACUGCAGCAGCAACAACAUCAGCAACAAGCGAGAGGAAUACUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCUGCCAGUGUGUGAGCCUGU .(((.(((..(((((((((.......)))))))))..)))..)))((.....))...(((.(((((((((..((((.((((..(.....)..)))).)))).))))).))))...))).. ( -36.30) >consensus AUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC____________AACAAGCGAGAGGAAUGCUUGGCCCGGAUUUGCAAUUCAUUGGCGUGUAUAUCCUGCCAGUGUGUGAGCCUGC (((((((((((((((((((.......)))))))))..............((((((.......)))))).........)))))))))).(((...((((..(.....)..)))).)))... (-35.60 = -35.80 + 0.20)
Location | 1,445,656 – 1,445,764 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -33.10 |
Energy contribution | -32.78 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.88 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445656 108 + 20766785 GCAAAUCCGGGCCAAGCAUUCCUCUCGCUUGUU------------GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAA .....((((.(((........(((((((..(((------------((.((((..(((....)))..)))).)))))((((.......)))).......))))).)).....))).)))). ( -35.12) >DroSec_CAF1 63717 108 + 1 GCAAAUCCGGGCCAAGCAUUCCUCGCGCUUGUU------------GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAA .....((((.(((..((....((((((...(((------------((.((((..(((....)))..)))).)))))((((.......))))......))))))..))....))).)))). ( -37.70) >DroSim_CAF1 62337 108 + 1 GCAAAUCCGGGCCAAGCAUUCCUCGCGCUUGUU------------GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAA .....((((.(((..((....((((((...(((------------((.((((..(((....)))..)))).)))))((((.......))))......))))))..))....))).)))). ( -37.70) >DroEre_CAF1 73216 114 + 1 GCAAAUCCGGGCCAAGCAUUUUCCUCGCUUGUUGCA------GUUGCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUCCACGCGAGCAGCAAAGGGCGUGGAA .....((((.(((((((.........))))((((((------(((((.((((..(((....)))..)))).))))))..........(((.....)))....)))))....))).)))). ( -38.60) >DroYak_CAF1 70351 120 + 1 GCAAAUCCGGGCCAAGUAUUCCUCUCGCUUGUUGCUGAUGUUGUUGCUGCUGCAGUGUAUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUCCCCACGAGCAGCAAAAGGCGUGGAA .....((((.(((((((.........))))((((((((((..(((((.((((..(((....)))..)))).))))).)))).....((((.......))))))))))....))).)))). ( -39.90) >consensus GCAAAUCCGGGCCAAGCAUUCCUCUCGCUUGUU____________GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAA .....((((.(((((((.........))))...............(((((((((((((.......))).)))).............((((.......))))))))))....))).)))). (-33.10 = -32.78 + -0.32)
Location | 1,445,689 – 1,445,804 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -39.32 |
Consensus MFE | -38.16 |
Energy contribution | -38.00 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.76 |
Structure conservation index | 0.97 |
SVM decision value | 5.23 |
SVM RNA-class probability | 0.999980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445689 115 + 20766785 -----GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGU -----((.((((..(((....)))..)))).))...((((.......)))).......((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))... ( -37.70) >DroSec_CAF1 63750 115 + 1 -----GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGU -----((.((((..(((....)))..)))).))...((((.......)))).......((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))... ( -37.70) >DroSim_CAF1 62370 115 + 1 -----GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGU -----((.((((..(((....)))..)))).))...((((.......)))).......((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))... ( -37.70) >DroEre_CAF1 73252 118 + 1 --GUUGCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUCCACGCGAGCAGCAAAGGGCGUGGAAAAGUUGCUAAAAUUUUCCGCGCUAUUUUCGCGCUCGUUGU --(((((.((((..(((....)))..)))).)))))...........(((.....)))((((((.(((((((((((((((((.((....)).))))))))))).)))).))))))))... ( -42.90) >DroYak_CAF1 70391 120 + 1 UUGUUGCUGCUGCAGUGUAUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUCCCCACGAGCAGCAAAAGGCGUGGAAAACUUGCUAAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGU ..(((((.((((..(((....)))..)))).)))))((((.......)))).......((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))... ( -40.60) >consensus _____GCUGCUGCAGUGUCUACGCAACAGCUGCAAUUCAUUAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGU .....((.((((..(((....)))..)))).))...((((.......)))).......((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))... (-38.16 = -38.00 + -0.16)
Location | 1,445,689 – 1,445,804 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -34.14 |
Energy contribution | -34.34 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.66 |
Structure conservation index | 0.93 |
SVM decision value | 4.58 |
SVM RNA-class probability | 0.999923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445689 115 - 20766785 ACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC----- .(..(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))..)..........................(((((((((.......)))))))))----- ( -35.60) >DroSec_CAF1 63750 115 - 1 ACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC----- .(..(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))..)..........................(((((((((.......)))))))))----- ( -35.60) >DroSim_CAF1 62370 115 - 1 ACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC----- .(..(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))..)..........................(((((((((.......)))))))))----- ( -35.60) >DroEre_CAF1 73252 118 - 1 ACAACGAGCGCGAAAAUAGCGCGGAAAAUUUUAGCAACUUUUCCACGCCCUUUGCUGCUCGCGUGGAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGCAAC-- ....((((((((((....(((.((((((..........)))))).)))..))))).))))).(((.....))).................(((((((((.......)))))))))...-- ( -37.30) >DroYak_CAF1 70391 120 - 1 ACAACGAGCUCGAAAAUAGCGCGGAAAAUUUUAGCAAGUUUUCCACGCCUUUUGCUGCUCGUGGGGAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAUACACUGCAGCAGCAACAA .(.((((((.(((((...(((.(((((((((....))))))))).))).)))))..)))))).)(.((.(((.........))).)).).(((((((((.......)))))))))..... ( -38.80) >consensus ACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUAAUGAAUUGCAGCUGUUGCGUAGACACUGCAGCAGC_____ ....(((((....(((..(((.(((((((((....))))))))).)))..)))...))))).............................(((((((((.......)))))))))..... (-34.14 = -34.34 + 0.20)
Location | 1,445,724 – 1,445,835 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.72 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -35.48 |
Energy contribution | -35.08 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.05 |
Mean z-score | -2.94 |
Structure conservation index | 0.93 |
SVM decision value | 4.97 |
SVM RNA-class probability | 0.999966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445724 111 + 20766785 UAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGUCUG---------UGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((...((((.((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))......---------(((...)))....)))).)))))))).. ( -36.10) >DroSec_CAF1 63785 111 + 1 UAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGUCUG---------UGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((...((((.((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))......---------(((...)))....)))).)))))))).. ( -36.10) >DroSim_CAF1 62405 111 + 1 UAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGUCCG---------UGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((........((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))..((((---------(((...)))...))))..)))))))).. ( -37.90) >DroEre_CAF1 73290 120 + 1 UAUAAAUGUGAUUUCCACGCGAGCAGCAAAGGGCGUGGAAAAGUUGCUAAAAUUUUCCGCGCUAUUUUCGCGCUCGUUGUCUGUGCUGUGUGUGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((..((((..((((((.(((((((((((((((((.((....)).))))))))))).)))).))))))))((..((.((.......))))..))....)))).)))))))).. ( -44.10) >DroYak_CAF1 70431 111 + 1 UAUAAAUGUGAUUUCCCCACGAGCAGCAAAAGGCGUGGAAAACUUGCUAAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGUCUG---------UGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((..((((..((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))......---------(((...)))....)))).)))))))).. ( -36.90) >consensus UAUAAAUGUGAUUUUCCCGCGAGCAGCAAAGGGCGUGGAAAACUUGCUGAAAUUUUCCGCGCUAUUUUCGAGCUCGUUGUCUG_________UGCCAAGCAAUCCGGAGCCACAUUUAAC ..((((((((..((((..((((((.(.(((.(((((((((((.((....)).))))))))))).))).)..))))))...............(((...)))....)))).)))))))).. (-35.48 = -35.08 + -0.40)
Location | 1,445,724 – 1,445,835 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.72 |
Mean single sequence MFE | -35.56 |
Consensus MFE | -31.40 |
Energy contribution | -31.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.88 |
SVM decision value | 2.99 |
SVM RNA-class probability | 0.998045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445724 111 - 20766785 GUUAAAUGUGGCUCCGGAUUGCUUGGCA---------CAGACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUA ..(((((((((.(((.(..(((...)))---------.......(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))).)))...))))))))).. ( -33.90) >DroSec_CAF1 63785 111 - 1 GUUAAAUGUGGCUCCGGAUUGCUUGGCA---------CAGACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUA ..(((((((((.(((.(..(((...)))---------.......(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))).)))...))))))))).. ( -33.90) >DroSim_CAF1 62405 111 - 1 GUUAAAUGUGGCUCCGGAUUGCUUGGCA---------CGGACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUA ..(((((((((.((((...(((...)))---------))))(..(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))..).....))))))))).. ( -35.80) >DroEre_CAF1 73290 120 - 1 GUUAAAUGUGGCUCCGGAUUGCUUGGCACACACAGCACAGACAACGAGCGCGAAAAUAGCGCGGAAAAUUUUAGCAACUUUUCCACGCCCUUUGCUGCUCGCGUGGAAAUCACAUUUAUA ..(((((((((.((((...((((((.....)).)))).......((((((((((....(((.((((((..........)))))).)))..))))).)))))..))))..))))))))).. ( -36.90) >DroYak_CAF1 70431 111 - 1 GUUAAAUGUGGCUCCGGAUUGCUUGGCA---------CAGACAACGAGCUCGAAAAUAGCGCGGAAAAUUUUAGCAAGUUUUCCACGCCUUUUGCUGCUCGUGGGGAAAUCACAUUUAUA ..(((((((((((((....(((...)))---------......((((((.(((((...(((.(((((((((....))))))))).))).)))))..))))))))))...))))))))).. ( -37.30) >consensus GUUAAAUGUGGCUCCGGAUUGCUUGGCA_________CAGACAACGAGCUCGAAAAUAGCGCGGAAAAUUUCAGCAAGUUUUCCACGCCCUUUGCUGCUCGCGGGAAAAUCACAUUUAUA ..(((((((((.(((.(..(((...)))................(((((....(((..(((.(((((((((....))))))))).)))..)))...)))))).)))...))))))))).. (-31.40 = -31.40 + 0.00)
Location | 1,445,835 – 1,445,937 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.89 |
Mean single sequence MFE | -42.64 |
Consensus MFE | -32.89 |
Energy contribution | -33.62 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.06 |
Mean z-score | -2.54 |
Structure conservation index | 0.77 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445835 102 + 20766785 ACAACGUAGCACAGC------------------GAACCGAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGC ........((...((------------------(..(((......(((((((....))))))).......)))..)))..(((((((((((((.(((...))).))))).)))))))))) ( -41.22) >DroSec_CAF1 63896 120 + 1 ACAACGCAGCACAGCGCGGCGCAGGAGCGACCCGAACCGAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGC .....((......))(((((.(.((..((........))..))..(((((((....)))))))........).)))))..(((((((((((((.(((...))).))))).)))))))).. ( -49.80) >DroSim_CAF1 62516 120 + 1 ACAACGCAGCACAGCGCGGCGCAGGAGCGACCCGAACCGAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGC .....((......))(((((.(.((..((........))..))..(((((((....)))))))........).)))))..(((((((((((((.(((...))).))))).)))))))).. ( -49.80) >DroEre_CAF1 73410 100 + 1 ACAACGCAGCGCAG--------------------ACCCGAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGCUUGCUGUGGCACACAGC .....((...((.(--------------------.((((......(((((((....))))))).......))))).))..(((((((((((((..((...))..))))).)))))))))) ( -39.22) >DroYak_CAF1 70542 100 + 1 ACAACGCAGAACAG--------------------ACCCCAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACAUAGC .....((......(--------------------.(((.......(((((((....)))))))........))).)....(((((((((((((.(((...))).))))).)))))))))) ( -33.16) >consensus ACAACGCAGCACAGC__________________GAACCGAACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGC .....((.((.........(((....))).......(((......(((((((....))))))).......))))).))..(((((((((((((.(((...))).))))).)))))))).. (-32.89 = -33.62 + 0.73)
Location | 1,445,857 – 1,445,977 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -37.56 |
Consensus MFE | -37.34 |
Energy contribution | -37.38 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.32 |
Structure conservation index | 0.99 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445857 120 + 20766785 ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((.(((...))).))))).)))))))(((((.......)))))..)))))..))).............. ( -38.30) >DroSec_CAF1 63936 120 + 1 ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((.(((...))).))))).)))))))(((((.......)))))..)))))..))).............. ( -38.30) >DroSim_CAF1 62556 120 + 1 ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((.(((...))).))))).)))))))(((((.......)))))..)))))..))).............. ( -38.30) >DroEre_CAF1 73430 120 + 1 ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGCUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((..((...))..))))).)))))))(((((.......)))))..)))))..))).............. ( -36.80) >DroYak_CAF1 70562 120 + 1 ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACAUAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((.(((...))).))))).)))))))(((((.......)))))..)))))..))).............. ( -36.10) >consensus ACCAAGGGAGAACAAGUUUUCCCAUUUUCACGGGCCGCAGUGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUG .....(((((((....)))))))......(((....(((((((((((((((((.(((...))).))))).)))))))(((((.......)))))..)))))..))).............. (-37.34 = -37.38 + 0.04)
Location | 1,445,857 – 1,445,977 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -29.69 |
Consensus MFE | -29.44 |
Energy contribution | -29.48 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 0.99 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445857 120 - 20766785 CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ..................(((((...(((((.......)))))((((((..(.(((.(((...))).))).).)))))).......(((((....))))).....))))).......... ( -30.30) >DroSec_CAF1 63936 120 - 1 CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ..................(((((...(((((.......)))))((((((..(.(((.(((...))).))).).)))))).......(((((....))))).....))))).......... ( -30.30) >DroSim_CAF1 62556 120 - 1 CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ..................(((((...(((((.......)))))((((((..(.(((.(((...))).))).).)))))).......(((((....))))).....))))).......... ( -30.30) >DroEre_CAF1 73430 120 - 1 CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAGCCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ..................(((((...(((((.......)))))((((((..(.(((.(((...))).))).).)))))).......(((((....))))).....))))).......... ( -30.60) >DroYak_CAF1 70562 120 - 1 CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUAUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ......................(((.(((((.......))))).)))((((..(((.(((...))).))).(((.(((........(((((....)))))......))).)))...)))) ( -26.94) >consensus CAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACACUGCGGCCCGUGAAAAUGGGAAAACUUGUUCUCCCUUGGU ..................(((((...(((((.......)))))((((((..(.(((.(((...))).))).).)))))).......(((((....))))).....))))).......... (-29.44 = -29.48 + 0.04)
Location | 1,445,897 – 1,446,017 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.58 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -30.20 |
Energy contribution | -30.44 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.02 |
Mean z-score | -2.73 |
Structure conservation index | 0.91 |
SVM decision value | 3.92 |
SVM RNA-class probability | 0.999708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445897 120 + 20766785 UGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAAUGUACCACCCUGUCCCAGGUCCCAGGUAU (((((((((((((.(((...))).))))).))))))))((((.......))))(((((((..((........)).)))))))..........(((((..((((...)))).....))))) ( -34.60) >DroSec_CAF1 63976 115 + 1 UGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAAUGUACCACCCUGU-----GUCCCAGGUAU (((((((((((((.(((...))).))))).))))))))((((.......)))).....((.((((((((..(((((...)))))...)))))))).)).((((.-----....))))... ( -33.60) >DroSim_CAF1 62596 115 + 1 UGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAAUGUACCACCCUGU-----GUCCCAGGUAU (((((((((((((.(((...))).))))).))))))))((((.......)))).....((.((((((((..(((((...)))))...)))))))).)).((((.-----....))))... ( -33.60) >DroEre_CAF1 73470 115 + 1 UGUGUGCUCGGCAUACCUUUGGCUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAUUGUACCACCCAGC-----GUCCCAGGUAU (((((((((((((..((...))..))))).))))))))....((((.(..((((.....((...((((((.(((((...))))).))))))...)).....)))-----)..).)))).. ( -32.20) >DroYak_CAF1 70602 115 + 1 UGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACAUAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAAUGUACCACCCUGU-----GUCCCAGGUAU (((((((((((((.(((...))).))))).))))))))((((.......)))).....((.((((((((..(((((...)))))...)))))))).)).((((.-----....))))... ( -31.70) >consensus UGUGUGCUCGGCAUACCUUUGGUUUGCUGUGGCACACAGCACAUCUUGAGUGCUUUAUUGUUAUGUUUUAAAAUUCAAUGAAUUCUAAAAAUGUACCACCCUGU_____GUCCCAGGUAU (((((((((((((.(((...))).))))).))))))))((((.......)))).....((.(((((((((.(((((...))))).))))).)))).)).((((..........))))... (-30.20 = -30.44 + 0.24)
Location | 1,445,897 – 1,446,017 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.58 |
Mean single sequence MFE | -36.44 |
Consensus MFE | -34.12 |
Energy contribution | -34.24 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -4.31 |
Structure conservation index | 0.94 |
SVM decision value | 4.41 |
SVM RNA-class probability | 0.999892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445897 120 - 20766785 AUACCUGGGACCUGGGACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACA ((((((.((.((((...))))((((((((((((((((((((...)))))))))))...........(((((.......))))))))))))))......))..))))))............ ( -37.40) >DroSec_CAF1 63976 115 - 1 AUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACA ...((((....-----.))))((((((((((((((((((((...)))))))))))...........(((((.......)))))))))))))).(((.(((...))).))).......... ( -36.50) >DroSim_CAF1 62596 115 - 1 AUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACA ...((((....-----.))))((((((((((((((((((((...)))))))))))...........(((((.......)))))))))))))).(((.(((...))).))).......... ( -36.50) >DroEre_CAF1 73470 115 - 1 AUACCUGGGAC-----GCUGGGUGGUACAAUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAGCCAAAGGUAUGCCGAGCACACA ...........-----(((.(((((((((.(((((((((((...)))))))))))...........(((((.......))))).)))))))).(((.(((...))).)))).)))..... ( -35.60) >DroYak_CAF1 70602 115 - 1 AUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUAUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACA ...((((....-----.))))((((((((((((((((((((...)))))))))))...........(((((.......)))))))))))))).(((.(((...))).))).......... ( -36.20) >consensus AUACCUGGGAC_____ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGUGCUGUGUGCCACAGCAAACCAAAGGUAUGCCGAGCACACA ...((((..........))))((((((((((((((((((((...)))))))))))...........(((((.......)))))))))))))).(((.(((...))).))).......... (-34.12 = -34.24 + 0.12)
Location | 1,445,937 – 1,446,046 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.98 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -20.50 |
Energy contribution | -20.34 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.46 |
Structure conservation index | 0.79 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1445937 109 - 20766785 -----------GUCGUUGUCGCUGGCAACCAGACAACCAGAUACCUGGGACCUGGGACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU -----------(((.((((.....))))((((....((((....))))...))))))).(((((......(((((((((((...))))))))))).....(......))))))....... ( -25.70) >DroSec_CAF1 64016 104 - 1 -----------GUCGUUGUCGCUGGCAACCAGACAACCAGAUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU -----------(((.(((((...(....)..)))))((((....)))))))-----...(((((......(((((((((((...))))))))))).....(......))))))....... ( -23.90) >DroSim_CAF1 62636 104 - 1 -----------GUCGUUGUCGCUGGCAACCAGACAACGAGAUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU -----------(((((((((...(....)..))))))(((...((((....-----.)))).........(((((((((((...)))))))))))...............)))..))).. ( -26.50) >DroEre_CAF1 73510 115 - 1 UCGUUGUCGUUGUCGUUGUCGCUGGCAACCAGACAACCAGAUACCUGGGAC-----GCUGGGUGGUACAAUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU .(((((((.((((((((((.....)))))..)))))((((....)))))))-----(((..((.((....(((((((((((...)))))))))))....)).))..)))......)))). ( -29.20) >DroYak_CAF1 70642 106 - 1 ---------CUAUCGUUGUCGCUGGCAACCAGACAACCAGAUACCUGGGAC-----ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU ---------.((((((.((((((((...)))).)..((((....)))))))-----)).(((((......(((((((((((...))))))))))).....(......))))))..)))). ( -24.20) >consensus ___________GUCGUUGUCGCUGGCAACCAGACAACCAGAUACCUGGGAC_____ACAGGGUGGUACAUUUUUAGAAUUCAUUGAAUUUUAAAACAUAACAAUAAAGCACUCAAGAUGU ...........(((((((((...(....)..))))))..((((((..(.........)..))))......(((((((((((...)))))))))))................))..))).. (-20.50 = -20.34 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:55 2006