Locus 19

Sequence ID 2R_DroMel_CAF1
Location 1,116,478 – 1,116,598
Length 120
Max. P 0.833686
window36

overview

Window 6

Location 1,116,478 – 1,116,598
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -38.63
Consensus MFE -38.05
Energy contribution -38.17
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.85
Structure conservation index 0.98
SVM decision value 0.72
SVM RNA-class probability 0.833686
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1116478 120 - 20766785
CUGCAUGAAAACUGUUGUCAGUUGUGAUAUCAAUGCUUGAGAUUGGUGCUUGUGCAUUAAUCACUGUAGACGAAAUGUCACGCGAGCGCUGGGGGGAGAAUCGAGUUGUUUCCGCAGAGU
.(((.....(((((....)))))(((((((...(((..(.(((((((((....))))))))).).)))......)))))))))).((.(((.((..(.(((...))).)..)).))).)) ( -36.70)
>DroSec_CAF1 51311 120 - 1
CUGCGUGAAAACUGUUGUCAAUUGUGAUAUCAAUGCUUGAGAUUGGUGCUUGUGCAUUAAUCACUGUAGACGAAAUGUCACGCGAGCGCUGGGGGGAGAAUCGAGUUGUUUCCGCAGAGU
.(((((((......(((((.((((......))))......(((((((((....)))))))))......)))))....))))))).((.(((.((..(.(((...))).)..)).))).)) ( -39.60)
>DroSim_CAF1 10337 120 - 1
CUGCGUGAAAACUGUUGUCAAUUGUGAUAUCAAUGCUUGAGAUUGGUGCUUGUGCAUUAAUCACUGUAGACGAAAUGUCACGCGAGCGCUGGGGGGAGAAUCGAGUUGUUUCCGCAGAGU
.(((((((......(((((.((((......))))......(((((((((....)))))))))......)))))....))))))).((.(((.((..(.(((...))).)..)).))).)) ( -39.60)
>consensus
CUGCGUGAAAACUGUUGUCAAUUGUGAUAUCAAUGCUUGAGAUUGGUGCUUGUGCAUUAAUCACUGUAGACGAAAUGUCACGCGAGCGCUGGGGGGAGAAUCGAGUUGUUUCCGCAGAGU
.(((((((......(((((.((((......))))......(((((((((....)))))))))......)))))....))))))).((.(((.((..(.(((...))).)..)).))).)) (-38.05 = -38.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:36 2006