Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,155,214 – 7,155,313 |
Length | 99 |
Max. P | 0.535214 |
Location | 7,155,214 – 7,155,313 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -32.57 |
Consensus MFE | -20.44 |
Energy contribution | -20.83 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.19 |
Mean z-score | -1.55 |
Structure conservation index | 0.63 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7155214 99 + 20766785 AGGGCGCCGACAACCGUUAGUCUGCUUACAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAGGCCCAGC---- .((((((.(((........))).))(((.(((......))).)))..((.(----------------(((((((....((((.(-(...)).))))))))))))))...))))...---- ( -32.20) >DroSec_CAF1 18402 99 + 1 AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCUAAGGCCCAGC---- .((((((.(((........))).))(((((((......))))))).((..(----------------(((((((....((((.(-(...)).))))))))))))...))))))...---- ( -35.50) >DroSim_CAF1 18905 99 + 1 AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCUAAGGCCCAGC---- .((((((.(((........))).))(((((((......))))))).((..(----------------(((((((....((((.(-(...)).))))))))))))...))))))...---- ( -35.50) >DroEre_CAF1 20356 99 + 1 AGGGCGUCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAAUCGCAGC---- .((((..((.....))...))))(((((((((......)))))))..((.(----------------(((((((....((((.(-(...)).)))))))))))))).....))...---- ( -31.50) >DroYak_CAF1 18735 99 + 1 AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC----------------UGCCAAGAUUUUGCGGA-UGCAAUGCGCACUUGGCAGCAAAAUCGCAGC---- .((((..((.....))...))))(((((((((......)))))))..((.(----------------(((((((....((((.(-(...)).)))))))))))))).....))...---- ( -30.80) >DroAna_CAF1 15370 119 + 1 AGGAAGCAGUCAUUGAUUGGUCCUCCCACAUUGCAACAUCGAUGACCUUUCAUGUGGCAUUGCUUUUGGCCAAGAUUCUGUUGAUUGUAUUGCGCAUUUGGCUUCAAAU-CCAAGCAUCA ..(((((.((((((((((((.....))).........)))))))))....((.((((((.(((..(..((.........))..)..))).))).))).)))))))....-.......... ( -29.90) >consensus AGGGCGCCGACAACCGUUAGUCCGCUUAGAGAGCAACAUCUUUAACCUGUC________________UGCCAAGAUUUUGCGGA_UGCAAUGCGCACUUGGCAGCAAAGGCCCAGC____ (((..((.(((........))).)).((((((......)))))).)))...................(((((((....((((.(......).)))))))))))................. (-20.44 = -20.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:57 2006