Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,152,936 – 7,153,031 |
Length | 95 |
Max. P | 0.999947 |
Location | 7,152,936 – 7,153,031 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -15.86 |
Energy contribution | -17.12 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.86 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7152936 95 + 20766785 UUUUUUGCUUUGAUUGAAGCGAUAAAGUAGCAAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUAUCAAUCAAAACAAUGCUUUG ......((((((((.(((((......)).(((..((....))..)))...))).))))))))(((((...((.......))....)))))..... ( -15.80) >DroSec_CAF1 16215 95 + 1 UUGUUUGCUUUGAUUGAAGCGAUAAAGUGGCAAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUAUCAAUCAAAACAAUGCUUUG ..(((((.(((((((((..((....((((((...((((..(((.......)))..)))).))))))...))....))))))))).))).)).... ( -21.30) >DroSim_CAF1 16637 95 + 1 UUGUUUGCUUUGAUUGAAGCGAUAAAGUGGCAAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUAUCAAUCAAAACAAUGCUUUG ..(((((.(((((((((..((....((((((...((((..(((.......)))..)))).))))))...))....))))))))).))).)).... ( -21.30) >DroEre_CAF1 18184 95 + 1 CUGUUUGCUUUGAUUCAAGCGAUAAAGUGGCGAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCAUGAAUAUCAAUCAAAACCAAAAUUUG ..((((...((((((((.(((.....(((((...((((..(((.......)))..)))).)))))))).)))..)))))...))))......... ( -18.20) >DroYak_CAF1 16647 95 + 1 UUGUUUGCUUUGAUUGAAGCGAUAAUGUGGCGAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUACCAAUCAAAACAAUGAUUUG ....(((.((((((((...((.....(((((...((((..(((.......)))..)))).)))))....)).....)))))))).)))....... ( -19.00) >DroAna_CAF1 13750 95 + 1 UUUUGCCCUCUGAUUGAAACGAUAAAGUGGCAAAAGGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUAUCAAUCAAAAUACAUUUUUG ..........(((((((..((....((((((....((((...........))))......))))))...))....)))))))............. ( -15.40) >consensus UUGUUUGCUUUGAUUGAAGCGAUAAAGUGGCAAAUUGAAAGAAAUGCAAAUUCCAUCAAAGCCAUUGCACGAAUAUCAAUCAAAACAAUGCUUUG ....(((.(((((((((..((....((((((...((((..(((.......)))..)))).))))))...))....))))))))).)))....... (-15.86 = -17.12 + 1.25)
Location | 7,152,936 – 7,153,031 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -23.40 |
Energy contribution | -23.60 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -3.06 |
Structure conservation index | 0.97 |
SVM decision value | 4.76 |
SVM RNA-class probability | 0.999947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7152936 95 - 20766785 CAAAGCAUUGUUUUGAUUGAUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUUGCUACUUUAUCGCUUCAAUCAAAGCAAAAAA .......(((((((((((((....((.....((((.((((.((((.......)))).))))...))))......))..))))))))))))).... ( -24.60) >DroSec_CAF1 16215 95 - 1 CAAAGCAUUGUUUUGAUUGAUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUUGCCACUUUAUCGCUUCAAUCAAAGCAAACAA .......(((((((((((((....((.....((((.((((.((((.......)))).))))...))))......))..))))))))))))).... ( -26.90) >DroSim_CAF1 16637 95 - 1 CAAAGCAUUGUUUUGAUUGAUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUUGCCACUUUAUCGCUUCAAUCAAAGCAAACAA .......(((((((((((((....((.....((((.((((.((((.......)))).))))...))))......))..))))))))))))).... ( -26.90) >DroEre_CAF1 18184 95 - 1 CAAAUUUUGGUUUUGAUUGAUAUUCAUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUCGCCACUUUAUCGCUUGAAUCAAAGCAAACAG .........(((((((((.(...........((((.((((.((((.......)))).))))...))))..........).)))))))))...... ( -19.40) >DroYak_CAF1 16647 95 - 1 CAAAUCAUUGUUUUGAUUGGUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUCGCCACAUUAUCGCUUCAAUCAAAGCAAACAA .......(((((((((((((....((.....((((.((((.((((.......)))).))))...))))......))..))))))))))))).... ( -25.30) >DroAna_CAF1 13750 95 - 1 CAAAAAUGUAUUUUGAUUGAUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCCUUUUGCCACUUUAUCGUUUCAAUCAGAGGGCAAAA ......(((.((((((((((....((.....((((...((.((((...........)))).)).))))......))..)))))))))).)))... ( -22.10) >consensus CAAAGCAUUGUUUUGAUUGAUAUUCGUGCAAUGGCUUUGAUGGAAUUUGCAUUUCUUUCAAUUUGCCACUUUAUCGCUUCAAUCAAAGCAAACAA .......(((((((((((((....((.....((((.((((.((((.......)))).))))...))))......))..))))))))))))).... (-23.40 = -23.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:56 2006