Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,148,958 – 7,149,091 |
Length | 133 |
Max. P | 0.997663 |
Location | 7,148,958 – 7,149,066 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -17.28 |
Consensus MFE | -16.14 |
Energy contribution | -16.14 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -1.41 |
Structure conservation index | 0.93 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7148958 108 - 20766785 UAUCGCAACAAAAUUUGCUCUUGCCCCACUAAAUUGAA--AAGGGUUUCACAAAAGCAAACCAAAUAAUGGUAAA--AGGUUUCGUAACAAUCCAAUAACAUUGUGAUUAAA .(((((((.....((((((.(((.(((...........--..))).....))).))))))........(((....--..(((....)))...)))......))))))).... ( -16.42) >DroSec_CAF1 12391 109 - 1 UAUCGCAACAACAUUUGCUCUUGCCCCACUAAAUUAAAA-AAGGGUUUCACAAAAGCAAGCCAAAUAAUGGUAGA--AGGUUUCGUAACAAUCAAAUAACAUUGUGAUUAAA .(((((((......(((((.(((.(((............-..))).....))).)))))((((.....)))).((--..(((....)))..))........))))))).... ( -17.74) >DroSim_CAF1 12780 109 - 1 UAUCGCAACAACAUUUGCUCUUGCCCCACUAAAUUAAAA-AAGGGUUUCACAAAAGCAAGCCAAAUAAUGGUAGA--AGGUUUCGUAACAAUCAAAUAACAUUGUGAUUAAC .(((((((......(((((.(((.(((............-..))).....))).)))))((((.....)))).((--..(((....)))..))........))))))).... ( -17.74) >DroEre_CAF1 14156 102 - 1 UAUCGCAACAACAUUUGCUCUUGCCCCACUAAAAUGUAA-AAGGGUUUCGCAAAAGCAAGCCA-----UGGCACAUUCCAUUUCAUAACAAUCAACUAACAUUGUGAU---- .(((((((......(((((.(((((((((......))..-..)))....)))).)))))((..-----..)).............................)))))))---- ( -19.80) >DroYak_CAF1 12635 103 - 1 UAUCGCAACAACAUUUGCUCUUGCCCCACUAAAAUACAAAAAGGGUUUCACCAAAGCAAGCCA-----CGGCGUAUUCCAUUUCAUAACAAUCAAAUAACAUUGUGAU---- .(((((((....(((((...............(((((.....((......)).......((..-----..)))))))...............)))))....)))))))---- ( -14.71) >consensus UAUCGCAACAACAUUUGCUCUUGCCCCACUAAAUUAAAA_AAGGGUUUCACAAAAGCAAGCCAAAUAAUGGUAGA__AGGUUUCGUAACAAUCAAAUAACAUUGUGAUUAA_ .(((((((......(((((.(((.(((...............))).....))).)))))((((.....)))).............................))))))).... (-16.14 = -16.14 + 0.00)
Location | 7,148,996 – 7,149,091 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.93 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -23.26 |
Energy contribution | -23.54 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.03 |
Structure conservation index | 0.92 |
SVM decision value | 2.90 |
SVM RNA-class probability | 0.997663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7148996 95 + 20766785 ACCAUUAUUUGGUUUGCUUUUGUGAAACCCUU--UUCAAUUUAGUGGGGCAAGAGCAAAUUUUGUUGCGAUAGCGAUUCAAUAACAAAAGCCACUCA .........((((((((((((((....(((..--...........)))))))))))..(((..(((((....)))))..))).....)))))).... ( -22.52) >DroSec_CAF1 12429 96 + 1 ACCAUUAUUUGGCUUGCUUUUGUGAAACCCUU-UUUUAAUUUAGUGGGGCAAGAGCAAAUGUUGUUGCGAUAGCGAUUCAAUAACAAAAGCCACUCA .........((((((((((((((....(((..-............)))))))))))...((((((((.(((....))))))))))).)))))).... ( -26.44) >DroSim_CAF1 12818 96 + 1 ACCAUUAUUUGGCUUGCUUUUGUGAAACCCUU-UUUUAAUUUAGUGGGGCAAGAGCAAAUGUUGUUGCGAUAGCGAUUCAAUAACAAAAGCCACUCA .........((((((((((((((....(((..-............)))))))))))...((((((((.(((....))))))))))).)))))).... ( -26.44) >DroEre_CAF1 14192 91 + 1 GCCA-----UGGCUUGCUUUUGCGAAACCCUU-UUACAUUUUAGUGGGGCAAGAGCAAAUGUUGUUGCGAUAGCGAUUCAAUAACAAAAGCGACUCA ....-----..((((((((((((....(((..-............)))))))))))...((((((((.(((....))))))))))).))))...... ( -23.94) >DroYak_CAF1 12671 92 + 1 GCCG-----UGGCUUGCUUUGGUGAAACCCUUUUUGUAUUUUAGUGGGGCAAGAGCAAAUGUUGUUGCGAUAGCGAUUCAAUAACAAAAGCCACUCA ...(-----(((((((((..(.(((((..(.....)..))))).)..))).........((((((((.(((....))))))))))).)))))))... ( -26.80) >consensus ACCAUUAUUUGGCUUGCUUUUGUGAAACCCUU_UUUUAAUUUAGUGGGGCAAGAGCAAAUGUUGUUGCGAUAGCGAUUCAAUAACAAAAGCCACUCA .........((((((((((((((....(((...............)))))))))))...((((((((.(((....))))))))))).)))))).... (-23.26 = -23.54 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006