Locus 1894

Sequence ID 2R_DroMel_CAF1
Location 7,136,628 – 7,136,723
Length 95
Max. P 0.625437
window3140

overview

Window 0

Location 7,136,628 – 7,136,723
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.60
Mean single sequence MFE -34.27
Consensus MFE -20.12
Energy contribution -21.48
Covariance contribution 1.36
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.59
SVM decision value 0.19
SVM RNA-class probability 0.625437
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7136628 95 + 20766785
CUACAAUUGGUAUCUGGGCAACUGCCAGAGCUCCCUUGCCUCCCGCUGCUGCCACUUGUUCUGCAACUGCUUGCACAGGCGGCGCAGCAGCUCGA
.......((((....((....))))))(((((............(((((.(((.(((((.(.((....))..).))))).))))))))))))).. ( -32.50)
>DroSec_CAF1 164252 95 + 1
CUACAAUUGGUAUCUGGGCCACUGCCAGAGGUCUCUGGCCUCCCGCUGCUGCCACUUGUUCAGAAGCUGCUUGCACAGGCGGCGUAGCAGCUCGA
...............(((.....((((((....))))))..)))((((((((..((.....))..(((((((....))))))))))))))).... ( -36.80)
>DroSim_CAF1 162444 95 + 1
CUACAAUUGGUAUCUGGGCCACUGCCAGAGGUCUCUGGCCUCCCGCUGCUGCCACUUGUUCUGGAGCUGCUUGCACAGGCGGCGUAGCAGCUCGA
..((((.(((((.(((((.....((((((....))))))..))))..).))))).))))....(((((((((((.......))).)))))))).. ( -38.10)
>DroEre_CAF1 169955 95 + 1
CUACAAUUGGUACCUGGGCCACUGCCAGAGGUCCCUUGCCUCCCGCUGCUGCCACUUGUUGUGGAGCUGCCUGCACAGGCGGCAUAGCAGCUCAA
........((.((((.(((....)))..)))).)).........(((((((((((.....)))).(((((((....))))))).))))))).... ( -41.10)
>DroYak_CAF1 174003 86 + 1
CUACAAUUGGUAUCUGGGCCACUGCCACAG---------CUCCCGCUGCUGCCACUUGUUCUGGAGCUGCUUGCACAGGCGGCGUAGCAGCUCAA
........((...((((((....))).)))---------...))((((((((..((......)).(((((((....))))))))))))))).... ( -32.80)
>DroPer_CAF1 174966 83 + 1
CUACAAUUGAUAUUUUGGAUAUUGCUGGAAG------------CGGUGCCAGAGCUGGGCGUGGAGCUGCAGGCAAAGGCGGCGUAUGAGCUGGU
.............(((((.((((((.....)------------))))))))))((..(.((((..(((((........))))).))))..)..)) ( -24.30)
>consensus
CUACAAUUGGUAUCUGGGCCACUGCCAGAGGUC_CU_GCCUCCCGCUGCUGCCACUUGUUCUGGAGCUGCUUGCACAGGCGGCGUAGCAGCUCGA
............(((((.......)))))...............((((((((..(.......)..(((((((....))))))))))))))).... (-20.12 = -21.48 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:48 2006