Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,121,936 – 7,122,030 |
Length | 94 |
Max. P | 0.611956 |
Location | 7,121,936 – 7,122,030 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -20.74 |
Consensus MFE | -7.76 |
Energy contribution | -8.96 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.37 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7121936 94 + 20766785 UCGGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGCGUAAGAUGGAAAG ..(....)((((...))))..((-------------(...(....)...(((....))).)))((((.--(.(((((.......))))).)...))))........... ( -19.40) >DroSec_CAF1 149633 94 + 1 GCAGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGCGUAAGAUGGAAAG ((......((((...))))....-------------....(....)..............)).((((.--(.(((((.......))))).)...))))........... ( -18.60) >DroEre_CAF1 155260 93 + 1 CCAGAAACAGGGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGG-GGGUGAGGUGGAAAG ((.......)).(((((((.(((-------------((..(....)...(((....))).....))))--).(((((.......)))))...)-))))))......... ( -23.00) >DroYak_CAF1 159261 92 + 1 --AGAAUCAGAGUCACCCUAAUG-------------UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA--UGAUGCCAAAAGAAGGCGUGAGGGGGGUGAGGUGGAAAG --....((.(..(((((((.(((-------------((..(....)...(((....))).....))))--).(((((.......)))))....)))))))..).))... ( -23.40) >DroAna_CAF1 152140 98 + 1 -----AUUAGGAGCACCCUAUUGUGUGUGCGAGUGUUAACGGGAACAAGUGAGAAAUUAAGCAAUGCAUAUGAUGCCCCAA--AG----GAGUGGAGUGAGAGGGAUGG -----........((((((.....(((((((..((((...(....)...(((....))))))).)))))))...((.(((.--..----...))).))...)))).)). ( -19.30) >consensus _CAGAAACAGGGUCACCCUAAUG_____________UAAAGGAAACAAGUGAGAAAUUAAGCAAUGCA__UGAUGCCAAAAGAAGGCGUGAGGGGCGUGAGAUGGAAAG ...............((((.....................(....)..........................(((((.......))))).))))............... ( -7.76 = -8.96 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:35 2006