Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,108,539 – 7,108,630 |
Length | 91 |
Max. P | 0.686418 |
Location | 7,108,539 – 7,108,630 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -20.85 |
Consensus MFE | -15.15 |
Energy contribution | -15.28 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.73 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7108539 91 - 20766785 UUUUUAUUUCUUUCCCU---U-UUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCCUUGAAGGAGGGAUAUUU ............(((((---(-((((.....((((((((.....))))).)))..((((((.......))))))......))))))))))..... ( -20.80) >DroSec_CAF1 136565 90 - 1 UUUUUAUUUCUUUC-CU---U-UUUUUAUUAGUGGAUGUGGUGAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ............((-((---(-((((((..((..(((....(((((.(((((.......))))).))))).)))..)).)))))))))))..... ( -20.80) >DroSim_CAF1 136539 90 - 1 UUUUUAUUUCUUUC-CU---U-UUUUCAUUAGUGGAUGUGGUGAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ............((-((---(-((((((..((..(((....(((((.(((((.......))))).))))).)))..)).)))))))))))..... ( -23.00) >DroEre_CAF1 141575 92 - 1 UUUUUACUUCUUUC-CUCUUUUUUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUCACAAGAGGGAU--UU ...........(((-(((((...........((((((((.....))))).)))..((((((.......))))))........)))))))).--.. ( -18.80) >consensus UUUUUAUUUCUUUC_CU___U_UUUUCAUUAGUGGAUGUGGUAAACGUUGCGCAUGACUUGUAAAGUUCAAGUUUUCUUUGAAAGAGGGAUAUUU ......((((((((.................((((((((.....))))).)))..((((((.......))))))......))))))))....... (-15.15 = -15.28 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:32 2006