| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,108,257 – 7,108,361 |
| Length | 104 |
| Max. P | 0.720044 |
| Location | 7,108,257 – 7,108,361 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 88.16 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7108257 104 + 20766785 UUAUUACUCCGCUCUCUAUGUUGGCAAUGCCGCACCGCUUGGGCGAAACUCAAGCAUAAAGCGGAAUCGGCCGAAAUAUGGAAAGCAAAACAAAACUAAAAAAA ..........(((.(((((((((((....((((...(((((((.....))))))).....)))).....)))..)))))))).))).................. ( -31.80) >DroPse_CAF1 143740 101 + 1 UUUCUACUCUACACUUUGUGUUGGCAAUGCCG---CGCUUGGGCGAACCACGAGCACAAAGUGGAAACGGCAGAAACAUGAAAAGCAAAACAAAACUAAAAAAA (((((.((...((((((((((((((...))).---(((....))).......))))))))))).....)).)))))............................ ( -24.10) >DroSec_CAF1 136286 103 + 1 CUAUUACUCCGCUCUCUGUGUUGGCAAGGCUGCAACGCUUGGGCGAAACUCGAGCACAAAGCGGAAUCGGCCGAAAUAUGGAAAGCAAAACAAAACUAAA-AAA ..........(((.(((((((((((....((((...(((((((.....))))))).....)))).....)))..)))))))).)))..............-... ( -28.30) >DroEre_CAF1 141290 103 + 1 CUAUUACUCCGCUCUCUGUGUUGGCAAUGCCGCAACGCUUGGGCGAAAGUCGAGCACAAAGCGGAAUCGGCCGAAAUAUGGAAAGCAAAACAAAACUAAA-AAA ..........(((.(((((((((((....((((...((((((.(....))))))).....)))).....)))..)))))))).)))..............-... ( -31.20) >DroYak_CAF1 145478 103 + 1 CUAUUACUCCGCUCUCUGUGUUGGCAAUGCCGCAACGCUUGGGCGAAACUCGAGCACAAAGCAGAAUCGGCCGAAAUAUGGAAAGCAAAACAAAACUAAA-AAA ..........(((.(((((((((((..(((......(((((((.....))))))).....)))......)))..)))))))).)))..............-... ( -25.00) >DroPer_CAF1 143196 101 + 1 UUUCUACUCUACACUUUGUGUUGGCAAUGCCG---CGCUUGGGCGAACCACGAGCACAAAGUGGAAACGGCAGAAACAUGAAAAGCAAAACAAAACUAAAAAAA (((((.((...((((((((((((((...))).---(((....))).......))))))))))).....)).)))))............................ ( -24.10) >consensus CUAUUACUCCGCUCUCUGUGUUGGCAAUGCCGCAACGCUUGGGCGAAACUCGAGCACAAAGCGGAAUCGGCCGAAAUAUGGAAAGCAAAACAAAACUAAA_AAA ..........(((.((((((((......((((...(((((..((.........))...)))))....))))...)))))))).))).................. (-21.50 = -21.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:31 2006