Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,087,322 – 7,087,423 |
Length | 101 |
Max. P | 0.992328 |
Location | 7,087,322 – 7,087,423 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -32.26 |
Consensus MFE | -26.46 |
Energy contribution | -26.82 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.44 |
Structure conservation index | 0.82 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7087322 101 - 20766785 CGACCACGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCUACGACUCCAGUUUCA ......(.((((((.....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))))).)................. ( -30.30) >DroSec_CAF1 115461 99 - 1 CGUCCAUGAA--GCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCCACGACUCCAGUUGCA .(.(((.(((--((.....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))))))).).((((....)))).. ( -33.50) >DroSim_CAF1 114390 101 - 1 CGCCCAUGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCGCUGCUUUUGGCCACGACUCCAGUUGCA .(((...(((((((.....(((((((((....(((...(((((.......)))))...)))..))))))))).))).)))).)))..((((....)))).. ( -34.40) >DroEre_CAF1 119888 95 - 1 ------UGAAGUGCCCCAUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUUCGCUUUUGGCUCCGACUCCAGUUGCA ------.((((........(((((((((....(((...(((((.......)))))...)))..)))))))))))))((..((((........))))..)). ( -31.60) >DroYak_CAF1 124094 101 - 1 CGCCCAUGAAGUGCCCCAUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUUCGGUUUUAACUUCGACUCCAGUUUCA ......(((((((((....(((((((((....(((...(((((.......)))))...)))..)))))))))....)))....))))))............ ( -31.50) >consensus CGCCCAUGAAGAGCCCCCUGCUGGCCAGAAAUAAGAUAUGGCCGCUAAUAGGCUACAACUUUAUUGGCCAGCCUCUGCUUUUGGCUACGACUCCAGUUGCA ...................(((((((((....(((...(((((.......)))))...)))..)))))))))....((..((((........))))..)). (-26.46 = -26.82 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006