| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,078,971 – 7,079,063 |
| Length | 92 |
| Max. P | 0.815629 |
| Location | 7,078,971 – 7,079,063 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 66.34 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -13.66 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7078971 92 + 20766785 ACA--------------CACACGCACA-CUCAC-ACACUUACACCCUCAA-----GAGUGUGGAAAUGGCG------UCGGUGUUGGCAUUCGCUAAACGCUGCCAUGCGCUUCCGUUU ...--------------....(((...-.((.(-((((((..........-----))))))))).((((((------.((...(((((....))))).)).)))))))))......... ( -27.30) >DroEre_CAF1 109939 94 + 1 ACAC--A--CACACAGU--------CA-UACAC-ACACUCACACUGACAU-----GCGUGUGGAAAUGGCG------GCGGUGUUGGCAUUCGCUAAACGCUGCCAUGCGCUUCCGUUU ...(--(--(((.((((--------((-.....-..........)))).)-----).)))))...((((((------(((...(((((....))))).)))))))))............ ( -33.06) >DroWil_CAF1 162217 101 + 1 AAACCUCAAAACUCA--------AACCCCCCAA-ACAUCCCUAUUCAUAUGGACAGC---UGCAAAUGGCG------UCGAUGUUGACGUUCGCUAAACGCUGCCAUGCGCUUCCGUUU ...............--------..........-..............(((((.(((---.(((..(((((------(((....))))....((.....)).))))))))))))))).. ( -20.50) >DroYak_CAF1 111310 89 + 1 ACAC--A--CACACA---------------CACUCCACUCACACUCACAU-----GCGUGUGGAAAUGGCG------UCGGUGUUGGCAUUCGCUAAACGCUGCCAUGCGCUUCCGUUU ....--.--......---------------...(((((.(.((......)-----).).)))))...((((------..((((((((((...((.....))))))).)))))..)))). ( -23.90) >DroAna_CAF1 111033 81 + 1 --------------------------------C-UCACCCAGACACACAU-----GCGUGUGGGGAAAGCGUUAGUAUUGGUGUUGGCAUUUGCUAAACGCUGCCAUGCGCUUCCGUUU --------------------------------.-...((((.((.(....-----).)).))))(.((((((..((...(((((((((....))).))))))))...)))))).).... ( -25.60) >consensus ACAC______AC_CA__________C____CAC_ACACUCACACUCACAU_____GCGUGUGGAAAUGGCG______UCGGUGUUGGCAUUCGCUAAACGCUGCCAUGCGCUUCCGUUU .......................................................((((((((....((((........((((....)))).......)))).))))))))........ (-13.66 = -14.18 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:24 2006