Locus 1880

Sequence ID 2R_DroMel_CAF1
Location 7,073,459 – 7,073,556
Length 97
Max. P 0.990458
window3113

overview

Window 3

Location 7,073,459 – 7,073,556
Length 97
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 76.55
Mean single sequence MFE -18.49
Consensus MFE -11.61
Energy contribution -11.43
Covariance contribution -0.19
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.63
SVM decision value 2.21
SVM RNA-class probability 0.990458
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7073459 97 - 20766785
ACCACCAUUUCAAUAUGGCUGUCGUCGAUUUGGUGGGUCGACACUCCAACCUCACCCCGCCACAGCAACCAUGCCAGAUAACCCCAUCC-------CCAUUCAU
..............((((..((..((....(((((((..((..........))..)))))))..(((....)))..))..)).))))..-------........ ( -19.00)
>DroSec_CAF1 101833 88 - 1
ACCACCAUUUCAAUAUGGCUGUCGUCGAUUUGGUGGGUCGCCACCCCGCCC----CCCUC-----CAUCCAUAAAAGAUAACCCCAUCC-------CCAUUCAU
....((((......)))).((((.......(((.(((..((......))..----))).)-----)).........)))).........-------........ ( -15.99)
>DroSim_CAF1 100564 88 - 1
ACCACCAUUUCAAUAUGGCUGUCGUCGAUUUGGUGGGUCGCCACCCCGCCC----CCCUC-----CAUCCAUAAAAGAUAACCCCAUCC-------CCAUUCAU
....((((......)))).((((.......(((.(((..((......))..----))).)-----)).........)))).........-------........ ( -15.99)
>DroEre_CAF1 104409 88 - 1
ACCAUCAUUUCAAUAUGGCUGUCGUCGAUUUGGUGG------GCUCCGCAG----CCCCCAU------CCAUACCAGAUAGCCCCAUUCCACAUCCCCACUUUU
................(((((((.......(((.((------(((....))----)))))).------........)))))))..................... ( -22.99)
>consensus
ACCACCAUUUCAAUAUGGCUGUCGUCGAUUUGGUGGGUCGCCACCCCGCCC____CCCUC_____CAUCCAUAAAAGAUAACCCCAUCC_______CCAUUCAU
.((((((..((.....(((....)))))..)))))).................................................................... (-11.61 = -11.43 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:23 2006