Locus 188

Sequence ID 2R_DroMel_CAF1
Location 1,445,049 – 1,445,167
Length 118
Max. P 0.797220
window425

overview

Window 5

Location 1,445,049 – 1,445,167
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.21
Mean single sequence MFE -29.84
Consensus MFE -23.78
Energy contribution -23.98
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.80
SVM decision value 0.61
SVM RNA-class probability 0.797220
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1445049 118 - 20766785
CCAACCCCUUUCACCUGUCUGCCAUCCAGAUUGUCAUCCCCUUCCUCGUGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGCGGCAGCAACAACAAUGGCCA--
....................(((((((((.(((.((.((.(......).)).)).))).)))))((((((........((..(((((.....)))))..)))))))).....))))..-- ( -29.90)
>DroSec_CAF1 63110 115 - 1
CCAACCCCUUUCACCUGUCUGCCAUCCAGAUUGUCAUCCCCUUCCUCGUGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGCGGCAGCAA---CAAUGGCCA--
....................(((((((((.(((.((.((.(......).)).)).))).)))))((((((........((..(((((.....)))))..)))))))---)..))))..-- ( -29.90)
>DroSim_CAF1 61729 115 - 1
CCAACCCCUUUCACCUGUCUGCCAUCCAGAUUGUCAUCCCCUUCCUCGUGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGCGGCAGCAA---CAAUGGCCA--
....................(((((((((.(((.((.((.(......).)).)).))).)))))((((((........((..(((((.....)))))..)))))))---)..))))..-- ( -29.90)
>DroEre_CAF1 72593 120 - 1
CCAACCCCUUUCACCUGUCUGCCAUCCAGAUUGUCAUCCCCUUCCUCGAGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGCGGCAGCAACAACAGUCAGCACG
..............(((.(((...(((((.(((.((...((((....)))).)).))).)))))((((((........((..(((((.....)))))..))))))))..))).))).... ( -31.30)
>DroYak_CAF1 69752 119 - 1
CCAACCCCUUUCACCUGUCUGCUAUCCAGAUUGUCAUCCCCUUCCUCGUGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGC-GCAGCAACAACAGUGAGCUCA
.........(((((.(((......(((((.(((.((.((.(......).)).)).))).)))))((((((........((.((.(((.....))))).-)))))))).)))))))).... ( -28.20)
>consensus
CCAACCCCUUUCACCUGUCUGCCAUCCAGAUUGUCAUCCCCUUCCUCGUGGUUGUUAAGCUGGAGUUGCUACUUUUUUGCACCUAUCUAUCUGAUGGCGGCAGCAACAACAAUGGCCA__
...............((.(((((.(((((.(((.((.((.(......).)).)).))).)))))..(((.........))).(((((.....))))).)))))))............... (-23.78 = -23.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:41 2006