Locus 1879

Sequence ID 2R_DroMel_CAF1
Location 7,070,737 – 7,070,834
Length 97
Max. P 0.615709
window3112

overview

Window 2

Location 7,070,737 – 7,070,834
Length 97
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.42
Mean single sequence MFE -19.92
Consensus MFE -15.27
Energy contribution -16.05
Covariance contribution 0.78
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value 0.17
SVM RNA-class probability 0.615709
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7070737 97 + 20766785
UCUGUCUCAAUCACUUGUCCGUCCGGCAAUUGUCUGGCAAACGAGACUUCAAUUGCCAGCAGUUGGUAAACUGCAUCGC--------CCCCCCUUUUCCUCACCA
........................(((((((((((.(....).))))...))))))).((((((....)))))).....--------.................. ( -21.60)
>DroSec_CAF1 99131 96 + 1
UCUGUCUCAAUCACUUGUCCGUCCGGCAAUUGUCUGGCAAACGAGACUUCAAUUGCCAGCAGUUGGUAAACUGCAUCGC--------UCCC-CUAUACCCCACAA
...............(((......(((((((((((.(....).))))...))))))).((((((....)))))).....--------....-.........))). ( -21.70)
>DroSim_CAF1 97827 93 + 1
UCUGUCUCAAUCUCUUGUCCGUCCGGCA-UUGUCU-GCAAACGAGACUUCAAUUGCCAGCAGUUGGUAAACUGCAUCGC--------UCCC-CUAU-CCCCACAA
...(((((.......((((.....))))-(((...-.)))..))))).......((..((((((....))))))...))--------....-....-........ ( -18.40)
>DroEre_CAF1 101396 88 + 1
UCUGUCUCAAUCACUUGUCCGUCCGGCAAUUGUCUGGCAAACGAGGCUUCAAUUGCCAGCAGUUGGUGAACU----------------CCC-CUCUUCCCCACCA
..........((((....((....))((((((.(((((((..(......)..)))))))))))))))))...----------------...-............. ( -20.50)
>DroYak_CAF1 102929 96 + 1
UCUGUCUCAAUCACUUGUCCGUCCGGCAAUUGUCUGGCAAACGAGACUUCAAUUGCCAGCAGUUGGUGAACUGCAUUUC--------CCCC-CUUUUCCCCACCA
........................(((((((((((.(....).))))...))))))).((((((....)))))).....--------....-............. ( -20.90)
>DroAna_CAF1 102899 100 + 1
UUUGUCUCAAUCACUUGUCC----UACAAUUGUCGAGCAAACGAGCCUUCAAUUACAUGCAGUUAAUAAACUGCAUUACACAGUACCUCUC-CCUUACCCCUCAG
((((.(((...((.(((...----..))).))..))))))).(((...........((((((((....))))))))..........)))..-............. ( -16.40)
>consensus
UCUGUCUCAAUCACUUGUCCGUCCGGCAAUUGUCUGGCAAACGAGACUUCAAUUGCCAGCAGUUGGUAAACUGCAUCGC________UCCC_CUUUUCCCCACAA
........................(((((((((((.(....).)))...)))))))).((((((....))))))............................... (-15.27 = -16.05 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:22 2006