| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,060,744 – 7,060,837 |
| Length | 93 |
| Max. P | 0.540730 |
| Location | 7,060,744 – 7,060,837 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.27 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -16.42 |
| Energy contribution | -17.45 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7060744 93 - 20766785 AGAGCUGGCCAGGCCAGCACUCUUGGCCAUGUAACAACUAUGGCGGCUCGACCCGCGUUGUUAUUACCAAAGGCCACAUA--AAAUGCUUAACUC------- .(((((((((.((((((.....))))))..((((((((....((((......)))))))))))).......)))))....--....)))).....------- ( -32.30) >DroVir_CAF1 111525 83 - 1 -AC-UUGGC----CCAUGGCCGAUGGCCAUGUAACAGCUAUGGCGGC---AUCAGCAUUGUUAUUAUAAAAG-------C--AAAGGCUCA-CUUUGCUAGC -..-...((----((((((((...))))))).....((....)))))---....................((-------(--((((.....-)))))))... ( -25.70) >DroSec_CAF1 89167 87 - 1 -GAGCUGGC-----CAGCACUCUUGGCCAUGUAACAGCCAUGGCGGCUCGACCCGCGUUGUUAUUACCAAAGGCCACAAA--AAAUGCUUAACUC------- -((((((((-----(((.....))))))).((((((((....((((......))))))))))))................--....)))).....------- ( -24.80) >DroSim_CAF1 87308 87 - 1 -GAGCUGGC-----CAGCACUCUUGGCCAUGUAAAAGCCAUGGCGGCUCGACCCGCGUUGUUAUUACCAAAGGCCACAAA--AAAUGCUUAACUC------- -((((((((-----(((.....))))))).......(((...((((......)))).(((.......))).)))......--....)))).....------- ( -22.90) >DroEre_CAF1 91902 89 - 1 -GCGUUGGC-----CAGCACUCUUGGCCAUGUAACAGCUAUGGCGGCUCGACUCGCGUUGUUAUUACCAAAGGCCACAAAAAAAAAGCUUAACUC------- -((..((((-----(((.....))))))).((((((((....((((......))))))))))))......................)).......------- ( -20.90) >DroYak_CAF1 92358 87 - 1 -GCGCUGGC-----CAGCACUCUUGGCCAUGUAACAGCUAUGGCGGCUCGACUCGCGUUGUUAUUACCAAAGGCCACAAA--AAAUGCUGAACUC------- -.....(..-----(((((....(((((..((((((((....((((......)))))))))))).......)))))....--...)))))..)..------- ( -22.90) >consensus _GAGCUGGC_____CAGCACUCUUGGCCAUGUAACAGCUAUGGCGGCUCGACCCGCGUUGUUAUUACCAAAGGCCACAAA__AAAUGCUUAACUC_______ ...((((.......)))).....(((((..((((((((....((((......)))))))))))).......))))).......................... (-16.42 = -17.45 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:19 2006