Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,060,584 – 7,060,676 |
Length | 92 |
Max. P | 0.524953 |
Location | 7,060,584 – 7,060,676 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.09 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -16.53 |
Energy contribution | -16.20 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.22 |
Mean z-score | -2.26 |
Structure conservation index | 0.60 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7060584 92 - 20766785 CCACUAAGCCAGUAGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUCGAAUAAAAUAUGGAAAAUAAA .......(((((..(..(((((((..---------------........))--)))))..)((.(((((...))))))))))))......................... ( -25.20) >DroSec_CAF1 89004 92 - 1 CCACUAAGCCAGUUGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA (((....((((((((..(((((((..---------------........))--)))))(((...)))..))))))))((........)).........)))........ ( -27.20) >DroSim_CAF1 87145 92 - 1 CCACUAAGCCAGUUGAACCACCAAAA---------------CGCUCCACUU--GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA (((....((((((((..(((((((..---------------........))--)))))(((...)))..))))))))((........)).........)))........ ( -27.20) >DroEre_CAF1 91742 101 - 1 CCACUGAGCAAGUUGCACCACCAA-AACCAGCAAAU-----CACUGCACUU--GGUGGGGCGGAGCCAGAAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA ((((((.((...((((.(((((((-...(((.....-----..)))...))--))))).)))).))))).....((((...)))).............)))........ ( -29.20) >DroYak_CAF1 92171 107 - 1 CCACUAAGCCAGUUAAACCACCAAAAACCAGCAAAACACACCACUUCACUU--GGUGGGGCGGAGUCAGCAAUUGGCCCUUGGCCCUGGAUUAAAAUAUGGAAAAUAAA ........(((.((((.(((..................(((((.......)--))))((((.(((...((.....)).))).))))))).))))....)))........ ( -25.00) >DroAna_CAF1 92893 97 - 1 CUGCUAAACCCUUGGAGCCACCAAAA-------AAC-----CACUACGCCUCAGAUGGGGCGUGGCCAGCAAUUGGCCCUUGGCUCUGGAAUAAAAUAUGGAAAAUAAA ...........(..((((((......-------...-----....(((((((....)))))))((((((...))))))..))))))..).................... ( -31.60) >consensus CCACUAAGCCAGUUGAACCACCAAAA_______________CACUCCACUU__GGUGGGGCGGAGCCAGCAAUUGGCCCUUGGCCCUGGAAUAAAAUAUGGAAAAUAAA ....................(((..................((((........))))((((.(((((((...)))))..)).))))............)))........ (-16.53 = -16.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:18 2006