Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,055,973 – 7,056,079 |
Length | 106 |
Max. P | 0.611904 |
Location | 7,055,973 – 7,056,079 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -27.50 |
Energy contribution | -28.33 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.09 |
Mean z-score | -2.71 |
Structure conservation index | 0.78 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7055973 106 - 20766785 CGAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGUGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU ..(((((...((((((((......))).....(((((...))))))))))((((((((..(((((((...))))))).((((....))))..)))))))).))))) ( -34.60) >DroSec_CAF1 84101 106 - 1 CGAAAUGAAAGUCGAGGCGACAAGACCAUUAAUUUGGUCUCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU ..(((((...((((((....).((((((......)))))).....)))))((((((((..(((((((...))))))).((((....))))..)))))))).))))) ( -35.80) >DroSim_CAF1 81981 106 - 1 CGAAAGGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGUGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU .....(((..((((((((......))).....(((((...)))))))))).(((((((..(((((((...))))))).((((....))))..)))))))))).... ( -35.70) >DroEre_CAF1 87390 106 - 1 CGAACUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUCUCGACUCCAUUU .........(((((((((......)))........((((((((((..(((.(.......)(((((((...)))))))..)))))))))))))..))))))...... ( -37.90) >DroYak_CAF1 87423 106 - 1 CAAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUCGACUCCAUUU ..(((((..(((((((((......)))........((((((((((..(((.(.......)(((((((...)))))))..)))))))))))))..)))))).))))) ( -39.80) >DroAna_CAF1 85440 104 - 1 CAAAAUGAAAGUCG-GGCGACAAUGCCAUUAAUUUA-AGUCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGGCUUCUUGGUCUCCAUUU ..(((((......(-((((((..((((.........-..........)))))))......(((((((...)))))))..))))..((((((....))))))))))) ( -27.41) >consensus CGAAAUGAAAGUCGAGGCGACAAGGCCAUUAAUUUGGAGCCCAAAUCGGCAGUCAAAAUCGAGCGUGCCACACGCUUUAGCCUUUGGGCUUCUUUUGACUCCAUUU ..(((((..(((((((((......)))........((.(((((((..(((.(.......)(((((((...)))))))..)))))))))).))..)))))).))))) (-27.50 = -28.33 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:17 2006