Locus 1874

Sequence ID 2R_DroMel_CAF1
Location 7,050,409 – 7,050,506
Length 97
Max. P 0.769307
window3106

overview

Window 6

Location 7,050,409 – 7,050,506
Length 97
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 86.97
Mean single sequence MFE -35.94
Consensus MFE -26.62
Energy contribution -27.44
Covariance contribution 0.82
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.74
SVM decision value 0.52
SVM RNA-class probability 0.769307
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7050409 97 - 20766785
GUUGCUGCUGCUUGUUUGCAGCGGCUGCUGUUGGUUUUAGCCGCUAAUCAGAGUUGGGCGCUUGACUGAUUCAAUUGACUUGGCC---GGCGA--GUGGCAA
((.((((((((......)))))))).))...........((((((..((.(.((..((((.((((.....)))).)).))..)))---))..)--))))).. ( -36.60)
>DroSec_CAF1 78550 97 - 1
GUUGCUGCUGCUUGUUUGCAGCGGCUGCUGUUGGUUUUAGCCGCUAAUCAGAGUUGGCCGCCUGACUGAUUCAAUUGACUUGGCC---GGCGA--GUGGCAA
...((((((((......))))))))(((..(((((....)))((((((....))))))((((.(.(..(.((....)).)..)).---)))))--)..))). ( -38.00)
>DroSim_CAF1 76476 97 - 1
GUUGCUGCUGCUUGUUUGCAGCGGCUGCUGUUGGUUUUAGCCGCUAAUCAGAGUUGGCCGCCUGACUGAUUCAAUUGACUUGGCC---GGCGA--GUGGCAA
...((((((((......))))))))(((..(((((....)))((((((....))))))((((.(.(..(.((....)).)..)).---)))))--)..))). ( -38.00)
>DroEre_CAF1 81728 93 - 1
GUUGC---UGCUUGUU------GGCUGCUGUUGGUUUUAGCCGCUAAUCAGCGUUGGUCGCCCGACUGAUUCAAUUGACUUGGCGGAAAGCGGUGGGAGCAG
....(---(((((.(.------.((((((...........(((((((((((.((..(((....)))..))....)))).)))))))..))))))).)))))) ( -31.72)
>DroYak_CAF1 81666 97 - 1
GUUGCCGCUGCUUGUUUGUUGCGGCUGCUGUUGGUUUUAGCCGCUAAUCAGAGUUGGUCGCUCGACUGAUUCAAUUGACUUGGCC---AGCGA--GGAGAUG
...(((((.((......)).)))))(((((..(((....)))((((((((((((..(((....)))..))))...))).))))))---)))).--....... ( -35.40)
>consensus
GUUGCUGCUGCUUGUUUGCAGCGGCUGCUGUUGGUUUUAGCCGCUAAUCAGAGUUGGCCGCCUGACUGAUUCAAUUGACUUGGCC___GGCGA__GUGGCAA
...((((((((......))))))))((((...(((....)))((((((((((((..(........)..))))...))).)))))....)))).......... (-26.62 = -27.44 +   0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:16 2006