Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,050,078 – 7,050,168 |
Length | 90 |
Max. P | 0.601082 |
Location | 7,050,078 – 7,050,168 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.01 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -18.37 |
Energy contribution | -18.42 |
Covariance contribution | 0.05 |
Combinations/Pair | 1.19 |
Mean z-score | -1.49 |
Structure conservation index | 0.66 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7050078 90 - 20766785 ACGCAAAAGCAAAAGCGGUAGCAA------CCGGCGGGUUGAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA .(((..........))).(((((.------(((((((.(((....))).)))))(((....(..((....))..)..))))))))))......... ( -28.60) >DroPse_CAF1 81821 77 - 1 ------------GAGCUGUGGCAG------CCA-CAGCCACAGUCCGAGCCGCCUCAGCGGUUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA ------------(..(((((((..------...-..)))))))..).(((.((((((....(..((....))..)..))))))))).......... ( -29.10) >DroSec_CAF1 78218 90 - 1 ACGCAAAAGCAAAAGCGGUAGCAA------CCAGCGGGUUUAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA ..((.(..((....))..).))..------(((.((((.....))))(((.((((((....(..((....))..)..)))))))))......))). ( -25.40) >DroSim_CAF1 76145 90 - 1 ACGCAAAAGCAAAAGCGGUAGCAA------CCAGCGGGUUGAGUUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA .(((..........))).(((((.------...((((.(((....))).))))((((....(..((....))..)..)))).)))))......... ( -25.00) >DroEre_CAF1 81399 82 - 1 ------AAGCAAAUGCGGUAGCAA------CCGGCG-GUUGAGC-CGAGCCGCCUCAGCGGCUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA ------..((....))..(((((.------((((((-(((....-..)))))))(((....(..((....))..)..))))))))))......... ( -26.80) >DroAna_CAF1 79327 91 - 1 -----GCAGCCACUUCAGUAGCCACUGUUGCCAGCAGGUUGAGCUCGAGACGCCUCAGCGGUUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA -----..(((.((((((....((((.(((((.(((..(((((((.......).)))))).))))))))...))))..))))))))).......... ( -31.00) >consensus _____AAAGCAAAAGCGGUAGCAA______CCAGCGGGUUGAGCUCGAGCCGCCUCAGCGACUGCAAUUAUGUGGAAUGAGGUGCUAAUUUAUGGA ..............((....))........(((.((((.....))))((.(((((((....(..((....))..)..)))))))))......))). (-18.37 = -18.42 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:15 2006