Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,038,035 – 7,038,126 |
Length | 91 |
Max. P | 0.874332 |
Location | 7,038,035 – 7,038,126 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 83.36 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -18.84 |
Energy contribution | -19.48 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -2.04 |
Structure conservation index | 0.85 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7038035 91 + 20766785 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGAAAACAAAAAGCGCUGUAAAAAGAAUGACUUCGUG (((((((((.....))))))...((((((((.....(((((.(((((....))))).)))))...))).((......))....)))))))) ( -20.20) >DroPse_CAF1 69367 84 + 1 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAACGAACAAAACCCAAUGAGAGAG-------GCGGCC .....(((.(((((((.....)))))))((((....((((((.((((....)))).)))))).....)))).......-------...))) ( -16.50) >DroSec_CAF1 66151 91 + 1 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACUAAAAGCGCUGUAAAAAGAAUGACUCCGUG (((((((((.....)))))).....((((((......((((((((((....))))))))))....)))))).................))) ( -24.70) >DroSim_CAF1 64095 91 + 1 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACAAAAAGCGCUGUAAAAAGAAUGACUCCGUG (((((((((.....)))))).....((((((.....(((((((((((....)))))))))))...)))))).................))) ( -26.70) >DroYak_CAF1 68782 82 + 1 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAGGCAAACAAAAAGCGCUGUUAAAAGACU--------- ...((((((.....))))))((((.((((((.....(((((((((((....)))))))))))...)))))).))))......--------- ( -26.40) >DroPer_CAF1 68696 84 + 1 CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAACGAGCAAAAACUAAUGAGAGAG-------GCGGCC .....(((..(((((.((.(((((......(....)((((((.((((....)))).))))))....))))).))))))-------)..))) ( -17.80) >consensus CACUUGGCAAUUUCUGCUAAUUAGAAGUGUUGAAAGUGUUUGCUUUGAUAUCGAAGCAAACAAAAAGCGCUGUAAAAAGAAU___UCCGUG ...((((((.....)))))).....((((((.....(((((((((((....)))))))))))...)))))).................... (-18.84 = -19.48 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:13 2006