Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,031,071 – 7,031,167 |
Length | 96 |
Max. P | 0.695755 |
Location | 7,031,071 – 7,031,167 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.44 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -13.54 |
Energy contribution | -14.65 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.17 |
Mean z-score | -1.96 |
Structure conservation index | 0.48 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7031071 96 + 20766785 -UGU-------UGCAUUUGGUCGCUUGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCGGUCGAUUCAAAUUUUUCAAUUUCUCGAAA -..(-------((((((.((((....))))))))))).........((((((((........((((((..------..))))))((..........))..)))))))).. ( -27.70) >DroVir_CAF1 75448 101 + 1 ---AUGCGAUCAGCAUGUGUGC-UGUGAUCGAUGCGAAAACACGGCCUAAAAGAAAUUAUAUGGCUGCUGU-----UUGCUGUCGAUUCAAAUUUUUCAAUUUCUCGAAC ---...(((.(((((....)))-))((((((((((((..((((((((((.((....)).)).))))).)))-----)))).))))).)))..............)))... ( -27.10) >DroPse_CAF1 62377 103 + 1 UGACUACACUCUGAGUGUGGUCAA-UGAUCGAUGCGAAUACAUGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA (((((((((.....))))))))).-(((((.(((......))).))))).((((((((....(((.((..------..)).)))((..........)))))))))).... ( -33.80) >DroYak_CAF1 60778 102 + 1 -GGU-------UGCAUUUGGUCGCUUGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCGUGGCCGUGGCGGUUGAUUCAAAUUUUUCAAUUUCUCAAAA -..(-------((((((.((((....)))))))))))...(((((..(((.((..((...))..)).)))...)))))(..(((((..........)))))..)...... ( -27.30) >DroMoj_CAF1 85329 85 + 1 -------------------UUC-AGUGAUCGAUGCGAAAACACGGCCCAAAAGAAAUUAUAUGGCUGCUGU-----UUGCUGUCGAUUCAAAUUUUUCAAUUUCACGAAC -------------------...-..((((((((((((..((((((((...((....))....))))).)))-----)))).))))).))).................... ( -18.70) >DroPer_CAF1 61263 103 + 1 UGACUACACUCUGAGUGUGGUCAA-UGAUCGAUGCGAAUACAUGGAUCGGGAGAAAUUAUAUGGCUGCCG------UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA (((((((((.....))))))))).-(((((.(((......))).))))).((((((((....(((.((..------..)).)))((..........)))))))))).... ( -33.80) >consensus _G_C_______UGCAUGUGGUC_A_UGAUCGAUGCGAAUACACGGAUCGGGAGAAAUUAUAUGGCUGCCG______UGGCUGUCGAUUCAAAUUUUUCAAUUUCUCAAAA ............................(((((.((......)).)))))((((((((....(((.((((......)))).)))((..........)))))))))).... (-13.54 = -14.65 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:12 2006