Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,444,907 – 1,445,022 |
Length | 115 |
Max. P | 0.516876 |
Location | 1,444,907 – 1,445,022 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.57 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -27.70 |
Energy contribution | -28.18 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.16 |
Mean z-score | -1.68 |
Structure conservation index | 0.69 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1444907 115 - 20766785 UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAAGCGCAUGUACACACAGCGUUGUGCUGAGCUUAUGUGUGUGUG----- ...........(((((.((....))..)))))....((((((((((((.((......(((((((.........((((.(((....)))))))))))))).)).))))))))))))----- ( -36.40) >DroSec_CAF1 62968 115 - 1 UCAAGUCGCUCC-----CGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUGCACACAGCGUUGUGCUGAGCGUGUGUGUGUGUGGGUGU ..((..((((..-----((....))..))))..))(((((((((((..(((......((((((((.........(((.(((....)))))))))))))).)))..))))))))))).... ( -45.30) >DroSim_CAF1 61582 120 - 1 UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUGCACACAGCGUUGUGCUGAGCGUAUGUGUGUGUGGGUGU ......((((.(((((.((....))..)))))....(((((((((((((((......((((((((.........(((.(((....)))))))))))))).))))))))))))))))))). ( -45.60) >DroEre_CAF1 72437 116 - 1 UCAAGUCGUUCUUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAGCAAACAACCGCAUGCACACA----UCUGUGUUAAGCGUAUGUGUGUGGCUGUGU ...((((..........((....))...((((((......(((.(((((((.....)).))))).)))...))))))..(((((((----(.(((.....))).)))))))))))).... ( -40.60) >DroYak_CAF1 69604 108 - 1 UCAAGUCGUUCUUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGCACACA----GUUGUGUUGAGGGCAUGUGUGU-------- ...........(((((.((....))..)))))....(((((((.(((((((.....)).))))).........((.((.(((((..----..))))))).)))))))))...-------- ( -32.20) >consensus UCAAGUCGCUCCUGCUCCGGAAACGAAAGCGGUUUUCAUAUGCAUGUGCGCGCCCAGCAGCACAAACAAACAACCGCAUGUACACACAGCGUUGUGCUGAGCGUAUGUGUGUGUG_GUGU ..((..((((.......((....))..))))..)).((((((((..(((((.....(((((..............)).)))(((((......)))))...)))))..))))))))..... (-27.70 = -28.18 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:40 2006