Locus 1868

Sequence ID 2R_DroMel_CAF1
Location 7,024,262 – 7,024,366
Length 104
Max. P 0.708909
window3099

overview

Window 9

Location 7,024,262 – 7,024,366
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.86
Mean single sequence MFE -16.98
Consensus MFE -1.06
Energy contribution -2.86
Covariance contribution 1.80
Combinations/Pair 1.17
Mean z-score -1.53
Structure conservation index 0.06
SVM decision value 0.37
SVM RNA-class probability 0.708909
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7024262 104 - 20766785
AAAUCAAAAAAGGCAAGCCAAAGCCACAAAUUAAAC--AUUCCAUAAUGGUAAAUAUACUACUUUGCUAUACUUGUUAUACAUU----UUAUUUUUGGACUGCAAAUGGA
...........(((........)))...........--..(((((.((((((((........))))))))..((((....((..----.......))....))))))))) ( -15.20)
>DroSec_CAF1 52632 104 - 1
AAAUCCAAAAAGGCAAUCCAAAGCCACAAAUUAAAC--GUUCCAUAAUGGUAAAUAUACUACUUUGCUAUACUUGAUAUACAUU----UUAUUUAUGAACUGCAAAUGGA
...((((....(((........)))...........--((((.(((((((((((........))))))))....((((......----.)))))))))))......)))) ( -15.10)
>DroEre_CAF1 54982 102 - 1
AAAUCCAAAAAUGCAGACCGAAG-CACAAAUUAAAC--AUUCCAUACUGGUAAU-AUACUACUUCGCUAUACUUGUUAUACAUU----CUGUUUAUGGACUGCAAAUGGC
....(((....(((((.((((((-((.......(((--(.........((((..-....))))..........)))).......----.))))).))).)))))..))). ( -16.07)
>DroYak_CAF1 53900 108 - 1
AACUCAAAAAAGGCAUGCCACAGCCACAAAUUAAAC--AUUCCAUACUGGUAAUCAAACUACUUUGCCAUACUUGUUAUGCAUUUAUUUGGUUUAUGGUCUGCAAAUGGA
............(((.((((.(((((.........(--((..((...((((((..........))))))....))..)))........)))))..)))).)))....... ( -19.93)
>DroAna_CAF1 52628 90 - 1
AAGUUAAAAAA------CAAAAGCCACAAAUUAAAUGUAUUUCACAGUCGUAU--AUA--------CUAAACUUGUUAUACAUU----UUGUUUAUGGCUUAGAAAAGGA
...........------...((((((.((((.((((((((..((.(((.((..--..)--------)...)))))..)))))))----).)))).))))))......... ( -18.60)
>consensus
AAAUCAAAAAAGGCAAGCCAAAGCCACAAAUUAAAC__AUUCCAUAAUGGUAAA_AUACUACUUUGCUAUACUUGUUAUACAUU____UUGUUUAUGGACUGCAAAUGGA
........................................(((((..((((((..........))))))...((((....(((...........)))....))))))))) ( -1.06 =  -2.86 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:10 2006