Locus 1863

Sequence ID 2R_DroMel_CAF1
Location 6,996,599 – 6,996,689
Length 90
Max. P 0.625519
window3092

overview

Window 2

Location 6,996,599 – 6,996,689
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 84.00
Mean single sequence MFE -15.89
Consensus MFE -10.83
Energy contribution -11.52
Covariance contribution 0.69
Combinations/Pair 1.16
Mean z-score -1.67
Structure conservation index 0.68
SVM decision value 0.19
SVM RNA-class probability 0.625519
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6996599 90 - 20766785
AAAAAUAAAAGAGGUACUGCCACUUACUAAAGUGUCAGAAAAACACUCAUACCAUUUCGCUGAUAAAAAAAAACGAAUUGGACCUGCUCC
...........((((.(((.(((((....))))).))).............(((.((((..............)))).)))))))..... ( -17.54)
>DroSec_CAF1 25167 85 - 1
---AAUAAAGAAGGUACUGCCACUUACUAAAGUGUCAGAAAAACACUCAUACCAUUUUGCUGAUAAAA--AACCGAAUUGGACCUGUUCC
---........((((.(((.(((((....))))).))).............(((.((((.(.......--.).)))).)))))))..... ( -15.80)
>DroSim_CAF1 23397 85 - 1
---AAUAAAAGAGGUACUGCCACUUACUAAAGUGUCAGAAAAACACUCAUACCAUUUUGCUGAUAAAA--AACCGAAUUGGACUUGUUCC
---.......(((((.(((.(((((....))))).)))....)).)))...(((.((((.(.......--.).)))).)))......... ( -14.20)
>DroYak_CAF1 25725 85 - 1
---AAUAUAAGGCGUACCUCCACUAACUAAAGUGUCAGAAAAUGGCUCCAACCAUUUCGCCGGUAAAA--AUGCGAAGUUGACCUGUUCC
---.......((((......((((......)))).....((((((......))))))))))(((...(--((.....))).)))...... ( -16.00)
>consensus
___AAUAAAAGAGGUACUGCCACUUACUAAAGUGUCAGAAAAACACUCAUACCAUUUCGCUGAUAAAA__AACCGAAUUGGACCUGUUCC
...........((((.(((.(((((....))))).))).............(((.((((..............)))).)))))))..... (-10.83 = -11.52 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:03 2006