Locus 1862

Sequence ID 2R_DroMel_CAF1
Location 6,995,595 – 6,995,685
Length 90
Max. P 0.627210
window3091

overview

Window 1

Location 6,995,595 – 6,995,685
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 90.42
Mean single sequence MFE -16.45
Consensus MFE -11.54
Energy contribution -11.62
Covariance contribution 0.08
Combinations/Pair 1.21
Mean z-score -2.20
Structure conservation index 0.70
SVM decision value 0.19
SVM RNA-class probability 0.627210
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6995595 90 - 20766785
UAAUUAAUUGCUACAUCAAAGCAGUAAAUAGAGCCACUCCCACUC--AGGCUCAUGCUCCAAUAAAAAUCAUAAAAUAUGGCCUGGCAAUUA
....(((((((((......((((.......(((((..........--.))))).))))..........(((((...)))))..))))))))) ( -16.80)
>DroSec_CAF1 24130 90 - 1
UUAUUAAUUGCUACAUCAAAGCAGUAAAUAGAGCCACUCCCUCUC--AGGCUCAUGCUCCAAUAAAAAUCGUAAAAUAUGGCCUGGCAAUUA
.((((.((((((.......)))))).))))(((((..........--.))))).(((((((.................)))...)))).... ( -17.43)
>DroSim_CAF1 22366 90 - 1
UAAUUAAUUGCUACAUCAAAGCAGUAAAUAGAGCCACUCCCUCUC--AGGCUCAUGCUCCAAUAAAAAUCGUAAAAUAUGGCCUGGCAAUUA
....(((((((((..(((............(((((..........--.))))).(((.............))).....)))..))))))))) ( -16.62)
>DroEre_CAF1 26802 92 - 1
UAAAUAAUUGCUACAUCAAAACAGUAAAUAGAGCCACUCCCUCUCCCAUGUUAGUGCUCCAAUAAAGCCCGUAAAAUAUGGCCUGGCAAUUA
....((((((((..................((((.(((..(........)..)))))))......((.(((((...))))).)))))))))) ( -18.10)
>DroYak_CAF1 24678 90 - 1
UAAAUAAUUUCUACAUCAAAACAAUAAAUAGAGCCACUCCCUCUC--GUGCUCAUGCUCCAAUGAAAUUCAUGAAAUAUGGCCUGGCAAUUA
................................((((..((...((--(((.((((......))))....))))).....))..))))..... ( -13.30)
>consensus
UAAUUAAUUGCUACAUCAAAGCAGUAAAUAGAGCCACUCCCUCUC__AGGCUCAUGCUCCAAUAAAAAUCGUAAAAUAUGGCCUGGCAAUUA
....(((((((((.................(((((.............)))))...............(((((...)))))..))))))))) (-11.54 = -11.62 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:02 2006