| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,990,760 – 6,990,859 |
| Length | 99 |
| Max. P | 0.680610 |
| Location | 6,990,760 – 6,990,859 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.60 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -23.30 |
| Energy contribution | -22.43 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6990760 99 - 20766785 UUGAUGAUAGUUCUGCGUAAAUGAAUACCAAUACGUGUGCAAUUGCAUACGCUUAAUCAUGGGCGUAGAUUCAAAAGCACUG---GGGGGAUAAUGAUCAGC (((((.((.((((((((((..((.....)).)))))((((..(((..((((((((....))))))))....)))..))))..---..))))).)).))))). ( -26.10) >DroSec_CAF1 19258 98 - 1 UUGAUGAUAGUUCUGCGUAAAUGAAUACCAAUACGCGUGCAAUUGCAUACGCUUAAUCAUGGGCGUAGAUUCAAUAGCCCAG---GG-GGGUAAUGGUCAGU (((((.((...(((((((..((((.((......((..(((....)))..))..)).))))..))))))).......((((..---..-)))).)).))))). ( -26.70) >DroEre_CAF1 22087 100 - 1 UUGAUGAUAGUUCUGCGUAAAUGAAUACCAAUACGUGUGCAAUUGCAUAUGCUUAAUCAGGGGCGUAGUUUCAAAAGCGCUGAAGGG-GGACAAUGGUCAG- .((((.((.(((((((((...((((......(((((((((....))))))((((......)))))))..))))...))))......)-)))).)).)))).- ( -25.20) >DroYak_CAF1 19605 100 - 1 UUGAUGAUAGUUCUGCGUAAAUGAAUACCAAUACGUGUGCAAUUGCAUACGCCUAAUCAGGGGCGUAGUUUCAAACACACUGAACAG-GGGCUAUGGUCAC- .((((.(((((((((.(((......)))).....(((((.....((.(((((((......)))))))))......)))))......)-))))))).)))).- ( -30.80) >consensus UUGAUGAUAGUUCUGCGUAAAUGAAUACCAAUACGUGUGCAAUUGCAUACGCUUAAUCAGGGGCGUAGAUUCAAAAGCACUG___GG_GGACAAUGGUCAG_ .((((.((.((((.(((((..((.....)).)))))((((..(((..(((((((......)))))))....)))..))))........)))).)).)))).. (-23.30 = -22.43 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:59 2006