Locus 1857

Sequence ID	2R_DroMel_CAF1
Location	6,973,807 – 6,973,900
Length	93
Max. P	0.996654

overview

Window 4

Location	6,973,807 – 6,973,900
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	95.81
Mean single sequence MFE	-50.42
Consensus MFE	-47.22
Energy contribution	-47.50
Covariance contribution	0.28
Combinations/Pair	1.06
Mean z-score	-1.88
Structure conservation index	0.94
SVM decision value	2.73
SVM RNA-class probability	0.996654
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6973807 93 - 20766785
GGUUGUCGAUGAGGCUGCCUCCGCUGCAGCGGCUGCUUCAGCGGCACGAGCGGCGGCCGCUGCCGCCGAGGUGGAAGCUACCGGUUGAUCCUC
((..((((((..(((..((((.((.((((((((((((...((.......)))))))))))))).)).))))..)......)).)))))))).. ( -46.30)
>DroSec_CAF1 3609 93 - 1
GCCCGUCGAUGCGGCUGCCUCCGCUGCAGCGGCUGCUUCAGCGGCACGAGCGGCGGCCGCUGCCGCCGAGGUGGAGGCUACCGGUUGAUCCUC
....((((((.(((..(((((((((((((((((((((...((.......))))))))))))))......)))))))))..))))))))).... ( -51.60)
>DroSim_CAF1 3593 93 - 1
GCCCGUCGAUGCGGCUGCCUCCGCUGCAGCGGCUGCUUCAGCGGCACGAGCGGCGGCCGCUGCCGCCGAGGUGGAGGCUACCGGUUGAUCCUC
....((((((.(((..(((((((((((((((((((((...((.......))))))))))))))......)))))))))..))))))))).... ( -51.60)
>DroEre_CAF1 3581 93 - 1
GACCGUCGAUGCGGCUGCCUCCGCUGCAGCGGCUGCUUCAACGGCACGAGCGGCGGCCGCUGCCGCCGAGGUGGAGGCUACCGGUUGAUCCUC
....((((((.(((..(((((((((((((((((((((((........))..))))))))))))......)))))))))..))))))))).... ( -50.10)
>DroYak_CAF1 3656 93 - 1
GCCCGUCGAUGCGGCUGCCUCCGCUGCAGCAGCUGCUUCAGCAGCACGAGCGGCGGCCGCUGCCGCUGAGGUGGAGGCUACCGGUUGAUCCUC
....((((((.(((..(((((((((.((((.(((((....)))))..(.(((((....)))))))))).)))))))))..))))))))).... ( -52.50)
>consensus
GCCCGUCGAUGCGGCUGCCUCCGCUGCAGCGGCUGCUUCAGCGGCACGAGCGGCGGCCGCUGCCGCCGAGGUGGAGGCUACCGGUUGAUCCUC
....((((((.(((..(((((((((.(.((.(((((....)))))....))((((((....))))))).)))))))))..))))))))).... (-47.22 = -47.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:55 2006