Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,972,781 – 6,972,875 |
Length | 94 |
Max. P | 0.741685 |
Location | 6,972,781 – 6,972,875 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 87.59 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -21.91 |
Energy contribution | -22.25 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.21 |
Mean z-score | -2.15 |
Structure conservation index | 0.82 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6972781 94 - 20766785 UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUAUUUAGCAUCCG .(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -28.50) >DroSec_CAF1 2583 94 - 1 UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUACUUAGCAUCCG .(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -30.80) >DroSim_CAF1 2567 94 - 1 UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUACUUAGCAUCCG .(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). ( -30.80) >DroEre_CAF1 2555 94 - 1 UGAGGUGAGUAUGGGCAUUUACAUUGGCCAAAUAGAGUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAUCGGUAUUUAGCAUCCG ...(.(((((((.((....((((((((((........((....))..(((.((....)).)))..))))))))))..)).))))))).)..... ( -26.90) >DroYak_CAF1 2630 94 - 1 UGAAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAUCGGUAUUUAGCAUCCG .....(((((((.((....((((((((((........((....))..(((.((....)).)))..))))))))))..)).)))))))....... ( -24.60) >DroAna_CAF1 2072 91 - 1 GGGUUUCAGUAUGGGAAUGGAUGGAAGCCAACUA---AGACAACAAACCUUGGAUUGUUAAUGGAGGUUAGCGUGUAACGGUAUUUGGUAUCCG ..(((((......)))))....(((.(((((((.---..(((...((((((.(........).))))))....)))...)))...)))).))). ( -18.80) >consensus UGGAGUGAGUAUGGGCAUUUACAUUGGCCAAAGAGAAUGGCAACAAACCUGGGAUAAUUGAGGGAGGUCAGUGUGUAACGGUAUUUAGCAUCCG .(((.(((((((.(.....((((((((((........((....))..(((.((....)).)))..))))))))))...).)))))))...))). (-21.91 = -22.25 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:54 2006