Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,970,257 – 6,970,377 |
Length | 120 |
Max. P | 0.859847 |
Location | 6,970,257 – 6,970,377 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.11 |
Mean single sequence MFE | -47.38 |
Consensus MFE | -39.99 |
Energy contribution | -40.22 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.26 |
Mean z-score | -2.19 |
Structure conservation index | 0.84 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6970257 120 - 20766785 CCGACUCCUCCUCCUUCUCCAUGCCACUGGGCAUUUGAGGCACUGCCCGGUUGAUGGCUGAGUACUCGGGGAGGUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU (((((..((((.....(((...(((((((((((..........))))))))....))).))).....))))..)))))........((((((((((((((....)))))))))).)))). ( -56.00) >DroVir_CAF1 38 120 - 1 CCGACUCUUCCUCUUUUUCCAUGCCGCUAGGCAUUUGUGGAACAGCACGAUUGAUGGCCGAAUACUCUGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU ................(((((((((....))))....)))))..((.(((((....((((.......)))).))))).))......((((((((((((((....)))))))))).)))). ( -43.30) >DroGri_CAF1 38 120 - 1 CCGACUCUUCCUCUUUCUCCAUGCCACUGGGCAUUUGUGGCACGGCUCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAACUCCUCGGACAAGUAGAUCGGCAUCUGCUUGGACGGAU (((..............(((.((((((.........))))))..((((((((..((.((((....)))).))))))))))........)))(((((((((....)))))))))..))).. ( -45.40) >DroWil_CAF1 3561 120 - 1 CUGAUUCCUCCUCCUUUUCCAUGCCGCUGGGCAUUUGCGGCACAGCCCGAUUGAUGGCUGAAUAUUCGGGUAGAUCGGGCAGCUCUUCGGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU .....(((..........((.((((((.........))))))..((((((((..((.((((....)))).))))))))))........))((((((((((....))))))))))..))). ( -46.90) >DroMoj_CAF1 38 120 - 1 CCGACUCUUCCUCUUUCUCCAUGCCACUUGGCAUCUGUGGCACGGCGCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU ...................(.((((((.........)))))).)((.(((((..((.((((....)))).))))))).))......((((((((((((((....)))))))))).)))). ( -47.20) >DroAna_CAF1 38 120 - 1 CCGACUCCUCCUCCUUCUCCAUACCGCUGGGCAUCUGCGGUACCGCCCUAUUAAUGGCUGAGUACUCGGGCAGAUCGGGCAGUUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU ..((((...............((((((.........))))))..((((.(((..((.((((....)))).))))).))))))))..((((((((((((((....)))))))))).)))). ( -45.50) >consensus CCGACUCCUCCUCCUUCUCCAUGCCACUGGGCAUUUGUGGCACAGCCCGAUUAAUGGCCGAAUACUCGGGCAAAUCGGGCAGCUCCUCCGCCAAGUAGAUGGGCAUCUGCUUGGACGGAU .....................((((((.........))))))..((((((((..((.((((....)))).))))))))))......((((((((((((((....)))))))))).)))). (-39.99 = -40.22 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:51 2006