Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,968,895 – 6,968,998 |
Length | 103 |
Max. P | 0.999975 |
Location | 6,968,895 – 6,968,998 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -25.12 |
Energy contribution | -25.72 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.72 |
Structure conservation index | 0.92 |
SVM decision value | 3.98 |
SVM RNA-class probability | 0.999741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6968895 103 + 20766785 UUGAUUGCGUUUUUUUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAGGCAGUAUUAA ...(((((.((((((....((((((..(((((((((((.(.(((.....))).)...)))))))))))..))))))..........)))))).)))))..... ( -28.54) >DroSec_CAF1 12976 103 + 1 UUGAUUGCGUUUUUUUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCACAGUGAAAUAUCUCGCGGAAAAGGCAGUAUUAA ...(((((.((((((............(((((((((((.(.(((.....))).)...)))))))))))....((((......)))))))))).)))))..... ( -27.50) >DroSim_CAF1 20387 102 + 1 UUGAUUGCGUUUU-UUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCACAGUGAAAUAUCUCGCGGAAAAGGCAGUAUUAA ...(((((.((((-((...........(((((((((((.(.(((.....))).)...)))))))))))....((((......)))))))))).)))))..... ( -27.50) >DroEre_CAF1 19826 102 + 1 UUGAUUGCGUUUU-UUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGCGCUCUGCAAAGUGAAAUAUCUCGCGGAAUAAGCAGUAUUAA ...(((((.....-.....((((((..((((((.((((.(.(((.....))).)...)))).))))))..))))))....((.....))....)))))..... ( -24.10) >DroYak_CAF1 13137 101 + 1 UUGAUUGCGUUUU-UUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAAGCAGUAUUA- ...(((((.((((-((..(((((((..(((((((((((.(.(((.....))).)...)))))))))))..))))))........)..)))))))))))....- ( -28.20) >consensus UUGAUUGCGUUUU_UUUUCUCACUUAACAGAGUUCUGUACAAACAAAAUGUUAGCUAACAGGGCUCUGCAAAGUGAAAUAUCUCGCGGAAAAGGCAGUAUUAA ...(((((...........((((((..(((((((((((.(.(((.....))).)...)))))))))))..))))))....((.....))....)))))..... (-25.12 = -25.72 + 0.60)
Location | 6,968,895 – 6,968,998 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -26.60 |
Energy contribution | -27.00 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -3.07 |
Structure conservation index | 0.99 |
SVM decision value | 5.13 |
SVM RNA-class probability | 0.999975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6968895 103 - 20766785 UUAAUACUGCCUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAAAAAAACGCAAUCAA .......(((.((((.(....)...((((((((.((((((..((((..((.(((.....))).))))))..)))))).))))))))....)))).)))..... ( -27.40) >DroSec_CAF1 12976 103 - 1 UUAAUACUGCCUUUUCCGCGAGAUAUUUCACUGUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAAAAAAACGCAAUCAA .......(((.((((.(....)...(((((((..((((((..((((..((.(((.....))).))))))..))))))..)))))))....)))).)))..... ( -25.50) >DroSim_CAF1 20387 102 - 1 UUAAUACUGCCUUUUCCGCGAGAUAUUUCACUGUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAA-AAAACGCAAUCAA .......(((.((((.(....)...(((((((..((((((..((((..((.(((.....))).))))))..))))))..)))))))...-)))).)))..... ( -25.50) >DroEre_CAF1 19826 102 - 1 UUAAUACUGCUUAUUCCGCGAGAUAUUUCACUUUGCAGAGCGCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAA-AAAACGCAAUCAA .......(((......(....)...((((((((.((((((..((((..((.(((.....))).))))))..)))))).))))))))...-.....)))..... ( -28.40) >DroYak_CAF1 13137 101 - 1 -UAAUACUGCUUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAA-AAAACGCAAUCAA -......((((((((.(....)...((((((((.((((((..((((..((.(((.....))).))))))..)))))).))))))))..)-)))).)))..... ( -27.70) >consensus UUAAUACUGCCUUUUCCGCGAGAUAUUUCACUUUGCAGAGCCCUGUUAGCUAACAUUUUGUUUGUACAGAACUCUGUUAAGUGAGAAAA_AAAACGCAAUCAA .......(((......(....)...((((((((.((((((..((((..((.(((.....))).))))))..)))))).)))))))).........)))..... (-26.60 = -27.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:49 2006