Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,968,662 – 6,968,782 |
Length | 120 |
Max. P | 0.579455 |
Location | 6,968,662 – 6,968,782 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -19.85 |
Energy contribution | -21.80 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.26 |
Mean z-score | -1.92 |
Structure conservation index | 0.66 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6968662 120 + 20766785 CGGCUCUCUGGCCGCCAUUAUUGCUUUCCAGCGAAACCACGCUAUACGCAAAAUCGGGUUUAUAUGUGUAAAUUUUUCGGGCGAUUUAUCAACCAGAUUGCGUUCGCUGAUGCAUGAAAA (((((....))))).......(((....(((((((.((..((.....))......((((((((....))))))))...))(((((((.......))))))).)))))))..)))...... ( -29.30) >DroVir_CAF1 14972 116 + 1 CGGCU--CUGGCCGCCAUUACUGCU-UCCAGCAAAACCACGCUAUACGCAAAAUUCGUGAAAUUUGUGUAAAUUUUUUU-ACGAAUUAUCAACAAAAUUGUGCGUGCAGGUGUGUGAAAA ((((.--...)))).......(((.-....)))...(((((((.(((((..(((((((((((...((....))..))))-)))))))....(((....))))))))..)))))).).... ( -30.50) >DroPse_CAF1 13734 116 + 1 CGGCUCUCUGGCCGCCAU---UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCUA-CGAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUUCGCUUGCAGGUGUGUGAAAA (((((....)))))...(---((((....)))))..(((((((.((((((((.((..-.)).)))))))).......((((((((.............))))))))..)))))).).... ( -32.82) >DroGri_CAF1 16824 116 + 1 CGGCU--AUGGCCGCCAUUACUGCU-UCCAGCAAAACCACGCUAUACGCAAAAUUCGUGAAAUUUGUGUAAAUUUUUCA-GCGAAUUAUCAACAAAAUUGUGCGUGCAGGUGUGUGAAAA ((((.--...)))).......(((.-....)))...(((((((.(((((..(((((((((((..(......)..)))))-.))))))....(((....))))))))..)))))).).... ( -29.40) >DroAna_CAF1 23007 110 + 1 CGGCUCUCUGGCCGCCAUUAUUGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCGGG----------AAAAUUUUUCGAGCAAUUUAUCAACAAAAUUGCGCUCGCUGAUGCAUGAAAA (((((....))))).......(((....((((........((.....))....(((..----------(.....)..)))(((((((.......)))))))....))))..)))...... ( -24.70) >DroPer_CAF1 13680 116 + 1 CGGCUCUCUGGCCGCCAU---UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCUA-CGAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUUCGCUUGCAGGUGUGUGAAAA (((((....)))))...(---((((....)))))..(((((((.((((((((.((..-.)).)))))))).......((((((((.............))))))))..)))))).).... ( -32.82) >consensus CGGCUCUCUGGCCGCCAUUA_UGCUUUCCAGCAAAACCACGCUAUACGCAAAAUCCG_CAAAUUUGUGUAAAUUUUUCAAGCGAAUUAUCAACAAAAUUGCGCUUGCAGGUGUGUGAAAA (((((....))))).......((((....))))....(((((..((((((((.((....)).)))))))).......((((((((((........)))).)))))).....))))).... (-19.85 = -21.80 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006