Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,442,898 – 1,443,018 |
Length | 120 |
Max. P | 0.651676 |
Location | 1,442,898 – 1,443,018 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.81 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -24.85 |
Energy contribution | -25.09 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.35 |
Structure conservation index | 0.85 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1442898 120 + 20766785 AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUUCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA ...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20) >DroSec_CAF1 60888 120 + 1 AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA ...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20) >DroSim_CAF1 59647 120 + 1 AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA ...................((....))((((((..((((.............(((((...(((.........))).....)))))((((......))))....)))).))))))...... ( -31.20) >DroEre_CAF1 70083 115 + 1 AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGUCAUGCCACCACUUGCCAC---UCCUGCUCCUGCGAACAAGCCGCACACGCCCAG-- ...................((....))((((((..((((.......(((...)))((((.((((...((........)).))---))..((....))))))..)))).))))))....-- ( -27.30) >DroYak_CAF1 65773 115 + 1 AAUACCAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUUCCAU---UCGUGCUCCUGUGAACAAGCCACACACACCCUG-- ...................((....))((((((...(((.((..((((......))))..))))).................---..(((((..((....)))).)))))))))....-- ( -26.10) >consensus AAUACUAUCAUAAAAUUUCGCGCAAGCGUGUGUCUCGGCAUUUUAACCGAAACGGGUUUUGAGCCAUGCCACCUCUUCCCACCCGUCGUGCUCCUGCGAACAAGCCGCACACACCCAGCA ...................((....))((((((..((((.......(((...)))((((.(((.((((..................)))))))....))))..)))).))))))...... (-24.85 = -25.09 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:37 2006