Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,955,296 – 6,955,390 |
Length | 94 |
Max. P | 0.917080 |
Location | 6,955,296 – 6,955,390 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 71.53 |
Mean single sequence MFE | -19.93 |
Consensus MFE | -13.05 |
Energy contribution | -12.83 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -1.50 |
Structure conservation index | 0.65 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6955296 94 + 20766785 GAGAGGAGGAUUGCCCAGUUACCCACUGGCUGCCUCCAGUUACCCACUUUUAAUGACAAGUGCUAAAGUUGAGCAUUUAAUAAAUAAACGUAGA ....(((((...(((.(((.....))))))..)))))....................(((((((.......)))))))................ ( -22.00) >DroSec_CAF1 25922 83 + 1 GAGAGGAGGAUUGCCCA--------ACGGCUGCCUCCAGUUACCCACUUUUAAUGACACUUGCUAAAGUUAAGCAUUAAAUAAAUAAG---AGA ....(((((...(((..--------..)))..)))))...........(((((((..((((....))))....)))))))........---... ( -20.40) >DroYak_CAF1 28281 72 + 1 AAGAGGAGGAUUGCCGA--------AGGGUCGCCUCCAGUUACCCACAUUUC--------------AGUUGAGCAUUAAAUGAAUAAACGAAGA ....(((((...(((..--------..)))..)))))...........((((--------------.(((...(((...)))....))))))). ( -17.40) >consensus GAGAGGAGGAUUGCCCA________ACGGCUGCCUCCAGUUACCCACUUUUAAUGACA__UGCUAAAGUUGAGCAUUAAAUAAAUAAACG_AGA ....(((((...(((............)))..)))))......................................................... (-13.05 = -12.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:39 2006