| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,954,584 – 6,954,684 |
| Length | 100 |
| Max. P | 0.939349 |
| Location | 6,954,584 – 6,954,684 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.99 |
| Mean single sequence MFE | -26.26 |
| Consensus MFE | -11.06 |
| Energy contribution | -12.26 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.42 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6954584 100 - 20766785 UAAUUGA-GGUGCAGGGGGUGCGCUGGAUGA------UCAAAUAGUAAUUGAG--UUGACUUAA--GGUUGGGCCCACGGAUAAGUGGAAUGCCUUGCCAUAG-AGCGAA-AA ...((((-.((.(((.(....).))).))..------))))...((..(((((--....)))))--(((.((((((((......))))...)))).)))....-.))...-.. ( -26.30) >DroPse_CAF1 22777 83 - 1 UAAUUGG--------------AGCUGGAUGA------GCAGAUAGCAAUUGGGUAUUGACUUAA--GGUUGGGCCUUUG-------AGAAUACCUUGCAAUGUUAGCCGG-AA .......--------------..((((...(------(((....(((...(((((((..(((((--((......)))))-------))))))))))))..))))..))))-.. ( -22.40) >DroSec_CAF1 25205 102 - 1 UAAUUGAAGGUGCAGGGGGUGCGCUGGAUGA------UCAAAUAGUAAUUGUG--UUGACUUAA--GGUUGGGCCCACGGAUAAGUGGAAUGCCUGGCCAUAG-AGUGAAAAA ...((((..((.(((.(....).))).))..------))))............--((.((((..--(((..(((((((......))))...)))..)))...)-))).))... ( -29.60) >DroYak_CAF1 27561 108 - 1 UGAUUAA-GGUGCAGGGGGUGCGCUGGAUGAGAAUCAGCAGAUAGUAAUUGAG--UUGACUUAAGAGGUUGGGCCCACGGAUAAGUGGAAUGCCUUGCCAUAG-AGCAAA-AA (((((..-((((((.....)))))).......)))))((.........(((((--....)))))..(((.((((((((......))))...)))).)))....-.))...-.. ( -29.60) >DroPer_CAF1 24273 83 - 1 UAAUUGG--------------AACUGGAUGA------GCAGAUAGCAAUUGGGUAUUGACUUAA--GGUUGGGCCUUUG-------AGAAUACCUUGCAAUGUUAGCCAG-AA .......--------------..((((...(------(((....(((...(((((((..(((((--((......)))))-------))))))))))))..))))..))))-.. ( -23.40) >consensus UAAUUGA_GGUGCAGGGGGUGCGCUGGAUGA______GCAGAUAGUAAUUGAG__UUGACUUAA__GGUUGGGCCCACGGAUAAGUGGAAUGCCUUGCCAUAG_AGCCAA_AA ......................((((..((........))..))))....................(((..(((((((......))))...)))..))).............. (-11.06 = -12.26 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:38 2006