| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,930,899 – 6,931,016 |
| Length | 117 |
| Max. P | 0.603964 |
| Location | 6,930,899 – 6,931,016 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.37 |
| Mean single sequence MFE | -31.19 |
| Consensus MFE | -16.31 |
| Energy contribution | -17.07 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6930899 117 - 20766785 UCCAGUAGCG---AUUCAGGCCAUUAAGUUGGUUAUUGAAUCUAUCCAAUUCCUCCUGACUUUGCAGACUGGCCAGAUGGCCACCCAUUUUGUGGCAUUUAUCCAAAGCAUCGUGCCAGU .......(((---(.(((((......((((((.............))))))...)))))..))))..((((((..(((((((((.......))))).(((....))).))))..)))))) ( -32.42) >DroSec_CAF1 5147 117 - 1 UCCAGUAGCG---AUUCAGGCCAUUAAGUUGGCUAUUGAAUCCAUCCAAUUCCUGCUGACUUUGCAGACUGGUCAGAUGGCCACCCAUUUUGCGGCAUUUAUCCAAAGCAUCGUGCCAGU ..((((.(.(---((((((((((......)))))..))))))).........((((.......))))))))((.((((((....)))))).))(((((..............)))))... ( -33.64) >DroEre_CAF1 2193 103 - 1 ----------------CAGGCCAUCAGGCUGGUUAUCAAAUCCAUUCAAUGCCUCCUGAUUUUACAGACUGGCCAGAUGGCCACCCAUUUUAUGGCA-UUUUCCAACACCGCGUGCCAGU ----------------..(((((((.(((..(((...(((((...............)))))....)))..))).)))))))..........(((((-(.............)))))).. ( -32.08) >DroYak_CAF1 6698 117 - 1 UCCAGUAGCG---AUUUAGGCCAUUAAGCUGGUUAUUGAAUCCAUCCAAUUCCUCCUCAGUUUGCAAACUGGCCAGAUGGCCACCCAUUUUGUGGCACUUUUCCAACGCCGCGUGCCAGU .......(((---.....(((((((..((.((..((((........)))).))....(((((....)))))))..))))))).........(((((...........))))).))).... ( -29.30) >DroAna_CAF1 2663 117 - 1 UCCAGUACCGUGCAUUUAU--CACC-AGCUUCCUUUUGAUGGUAUCCAAAUCCUCCUGGUGCCUUAGGUUGGCCAAAUGUCCGCCCAUUUCAUGGCAUUUCUGCAGUGCCACGUGCCACU ....((((((..(((((..--..((-((((......(((.((((.(((........))))))))))))))))..)))))..)).........(((((((.....))))))).)))).... ( -28.50) >consensus UCCAGUAGCG___AUUCAGGCCAUUAAGCUGGUUAUUGAAUCCAUCCAAUUCCUCCUGACUUUGCAGACUGGCCAGAUGGCCACCCAUUUUGUGGCAUUUAUCCAAAGCCGCGUGCCAGU ..................(((((((..(((((((................................)))))))..)))))))...........(((((..............)))))... (-16.31 = -17.07 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:36 2006