Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,926,396 – 6,926,500 |
Length | 104 |
Max. P | 0.666292 |
Location | 6,926,396 – 6,926,500 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -27.91 |
Consensus MFE | -23.27 |
Energy contribution | -23.93 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.83 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6926396 104 + 20766785 GUUUAGCUAGUCUUUAGCUAGCAAAGAGCGGAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAA----------ACUACAAAAUGAGCGGUUGAGCAAA (((((((((((((((.(((.......))).))))))).......(((.((..((....))..)).)))....(((((..----------.........)))))))))))))... ( -26.50) >DroSec_CAF1 617 108 + 1 GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAAU------GCUACAAAAUGAGCGGUUGAGCAAG (((....(((((((.((((.......)))).)))))))..))).(((.((..((....))..)).)))...(((((((....(------(((........)))).))))))).. ( -28.10) >DroSim_CAF1 560 114 + 1 GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAAGCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAAAUUACUGGCGACAAAAUGAGCGGUUGAGCAAG ((((((((((((((.((((.......)))).))))))........(((((..((....))...)))))....(((((..........((....))...)))))))))))))... ( -29.12) >consensus GUUUAGCUAGUCUUUAGCUACCAAAGAGCUUAGGACUGAUAACAGAAACCAAUCGACAGAGAGGCUUUAGAUGCUCAAAUAA_______GCUACAAAAUGAGCGGUUGAGCAAG ((((((((((((((.((((.......)))).)))))).......(((.((..((....))..)).)))....(((((.....................)))))))))))))... (-23.27 = -23.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:35 2006