Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,921,117 – 6,921,227 |
Length | 110 |
Max. P | 0.904261 |
Location | 6,921,117 – 6,921,227 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -28.43 |
Energy contribution | -28.77 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.87 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6921117 110 + 20766785 CUAAAGAUUCAGAUUUC--------CAUCUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGAACAACCCGCUGUUGU ........((((((...--------.))))(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))(((((.....))))) ( -31.40) >DroVir_CAF1 51656 112 + 1 CAA-AACUUCGCAUUUC-----GUAAUUUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGAAUAGUGCUCAUGCGC ...-.....(((((...-----(((..((((((((.((((((.......))))))....((((((.....)))))).((((.......))))....))))))))...)))..))))). ( -38.10) >DroPse_CAF1 40686 107 + 1 UAAAAUGUAGAUAAUUC-----------UUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC .........(((.....-----------(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))........))).... ( -29.92) >DroWil_CAF1 59083 117 + 1 GAAAA-AAAGAAAUUACUUUCGGUUUGUUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAAUAGCCCCACUGUGC ((((.-.((....))..))))((.(((((((((((.((((((.......))))))....((((((.....)))))).((((.......))))....))))))))))).))........ ( -38.00) >DroAna_CAF1 40853 110 + 1 UUAAUUGUCACUUUUUC--------CAAUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUGCCACUGAGCUAAAGAGGCGCAUAAACCGGUCUCCG .................--------.....(((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))........(((...))) ( -28.40) >DroPer_CAF1 41315 107 + 1 UAAAAUGUAGAUAAUUC-----------UUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC .........(((.....-----------(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))........))).... ( -29.92) >consensus UAAAAUGUAGAUAUUUC__________UUUGCCUCCUGUGAGGAUUGAACUCACGACCCCUGGUUUACAAGACCAGUGCUCUACCACUGAGCUAAAGAGGCGAACAACCCGAUCGCGC ............................(((((((.((((((.......))))))....((((((.....)))))).((((.......))))....)))))))............... (-28.43 = -28.77 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:34 2006